{"id":"https://openalex.org/W2181415419","doi":"https://doi.org/10.2390/biecoll-jib-2012-199","title":"Using Variable Precision Rough Set for Selection and Classification of Biological Knowledge Integrated in DNA Gene Expression","display_name":"Using Variable Precision Rough Set for Selection and Classification of Biological Knowledge Integrated in DNA Gene Expression","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2181415419","doi":"https://doi.org/10.2390/biecoll-jib-2012-199","mag":"2181415419","pmid":"https://pubmed.ncbi.nlm.nih.gov/22829570"},"language":"en","primary_location":{"id":"pmid:22829570","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22829570","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2012-199","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013719235","display_name":"D. Calvo-Dmgz","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Calvo-Dmgz, Diego","raw_affiliation_strings":["ESEI: Escuela Superior de Enxe\u00f1er\u00eda Inform\u00e1tica, University of Vigo, Ed. Polit\u00e9cnico, Campus Universitario As Lagoas s/n 32004 Ourense, Spain"],"affiliations":[{"raw_affiliation_string":"ESEI: Escuela Superior de Enxe\u00f1er\u00eda Inform\u00e1tica, University of Vigo, Ed. Polit\u00e9cnico, Campus Universitario As Lagoas s/n 32004 Ourense, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074130910","display_name":"J. F. G\u00e1lvez","orcid":"https://orcid.org/0000-0002-0918-7778"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Galvez, Juan Francisco","raw_affiliation_strings":["University of Vigo;"],"affiliations":[{"raw_affiliation_string":"University of Vigo;","institution_ids":["https://openalex.org/I6289922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044007257","display_name":"Daniel Glez\u2010Pe\u00f1a","orcid":"https://orcid.org/0000-0002-6129-7245"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Glez-Pena, Daniel","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057254411","display_name":"Silvana G\u00f3mez-Meire","orcid":"https://orcid.org/0000-0001-7815-9909"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gomez-Meire, Silvana","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5048392452","display_name":"Florentino Fdez\u2010Riverola","orcid":"https://orcid.org/0000-0002-3943-8013"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fdez-Riverola, Florentino","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5013719235"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.0217,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.87478324,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"9","issue":"3","first_page":"199","last_page":"199"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11063","display_name":"Rough Sets and Fuzzy Logic","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11063","display_name":"Rough Sets and Fuzzy Logic","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9689000248908997,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.9251999855041504,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rough-set","display_name":"Rough set","score":0.7703202366828918},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6881343126296997},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6652858853340149},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.636815071105957},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.6349883675575256},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.5609703063964844},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5586129426956177},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4961584508419037},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4628303349018097},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4589783251285553},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4187008738517761},{"id":"https://openalex.org/keywords/gene-selection","display_name":"Gene selection","score":0.4142618775367737},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.38999998569488525},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23217225074768066},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.22151920199394226},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1664505898952484},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1394263505935669},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07777291536331177}],"concepts":[{"id":"https://openalex.org/C111012933","wikidata":"https://www.wikidata.org/wiki/Q3137210","display_name":"Rough set","level":2,"score":0.7703202366828918},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6881343126296997},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6652858853340149},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.636815071105957},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.6349883675575256},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.5609703063964844},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5586129426956177},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4961584508419037},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4628303349018097},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4589783251285553},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4187008738517761},{"id":"https://openalex.org/C2984324147","wikidata":"https://www.wikidata.org/wiki/Q3080021","display_name":"Gene selection","level":5,"score":0.4142618775367737},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.38999998569488525},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23217225074768066},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.22151920199394226},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1664505898952484},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1394263505935669},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07777291536331177},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false}],"locations_count":2,"locations":[{"id":"pmid:22829570","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22829570","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"doi:10.2390/biecoll-jib-2012-199","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2012-199","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2012-199","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2012-199","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W163431562","https://openalex.org/W198768881","https://openalex.org/W1506072480","https://openalex.org/W1512098439","https://openalex.org/W1534318609","https://openalex.org/W1571401318","https://openalex.org/W1607267312","https://openalex.org/W1966626540","https://openalex.org/W1967320885","https://openalex.org/W1983481592","https://openalex.org/W1993286543","https://openalex.org/W1994039691","https://openalex.org/W1997362234","https://openalex.org/W2006019492","https://openalex.org/W2020541351","https://openalex.org/W2032017353","https://openalex.org/W2035590867","https://openalex.org/W2053027820","https://openalex.org/W2064236088","https://openalex.org/W2067396574","https://openalex.org/W2073503722","https://openalex.org/W2074557636","https://openalex.org/W2086876270","https://openalex.org/W2097664282","https://openalex.org/W2104150310","https://openalex.org/W2112076978","https://openalex.org/W2115358481","https://openalex.org/W2118413367","https://openalex.org/W2121111814","https://openalex.org/W2123060905","https://openalex.org/W2129110050","https://openalex.org/W2133990480","https://openalex.org/W2134752341","https://openalex.org/W2138679062","https://openalex.org/W2156443053","https://openalex.org/W2160697532","https://openalex.org/W2163563958","https://openalex.org/W2167310130","https://openalex.org/W2294798173","https://openalex.org/W2911964244"],"related_works":["https://openalex.org/W2366627840","https://openalex.org/W2515339478","https://openalex.org/W2385761707","https://openalex.org/W1524627402","https://openalex.org/W2358589834","https://openalex.org/W2391097993","https://openalex.org/W2181415419","https://openalex.org/W4246335225","https://openalex.org/W2012918022","https://openalex.org/W198768881"],"abstract_inverted_index":{"DNA":[0],"microarrays":[1,165],"have":[2],"contributed":[3],"to":[4,83,110,140,147,171,195],"the":[5,14,52,66,88,116,127,142],"exponential":[6],"growth":[7],"of":[8,20,31,71,87,118,151,200],"genomic":[9],"and":[10,133,146,188],"experimental":[11,176],"data":[12,23,105,130],"in":[13,115],"last":[15,53],"decade.":[16,54],"This":[17,55,97],"large":[18],"amount":[19],"gene":[21,45,63,119],"expression":[22],"has":[24,47,92],"been":[25,93],"used":[26],"by":[27,69],"researchers":[28],"seeking":[29],"diagnosis":[30],"diseases":[32],"like":[33],"cancer":[34,164],"using":[35],"machine":[36],"learning":[37],"methods.":[38],"In":[39],"turn,":[40],"explicit":[41,58],"biological":[42,59,90,113],"knowledge":[43,91,114],"about":[44],"functions":[46],"also":[48],"grown":[49],"tremendously":[50],"over":[51,161],"work":[56],"integrates":[57],"knowledge,":[60,124],"provided":[61,89],"as":[62],"sets,":[64],"into":[65,131],"classication":[67],"process":[68],"means":[70],"Variable":[72],"Precision":[73],"Rough":[74],"Set":[75],"Theory":[76],"(VPRS).":[77],"The":[78,156,175],"proposed":[79,157],"model":[80,102,158,187],"is":[81,108,159,193],"able":[82,109,194],"highlight":[84],"which":[85,107],"part":[86],"important":[94],"for":[95,103],"classification.":[96],"paper":[98],"presents":[99],"a":[100,149,197],"novel":[101],"microarray":[104,129],"classification":[106,154,173],"incorporate":[111],"prior":[112],"form":[117],"sets.":[120],"Based":[121],"on":[122],"this":[123],"we":[125,135],"transform":[126],"input":[128],"supergenes,":[132],"then":[134],"apply":[136],"rough":[137],"set":[138,150],"theory":[139],"select":[141],"most":[143],"promising":[144],"supergenes":[145],"derive":[148],"easy":[152],"interpretable":[153],"rules.":[155],"evaluated":[160],"three":[162],"breast":[163],"datasets":[166],"obtaining":[167],"successful":[168],"results":[169,177],"compared":[170],"classical":[172,189],"techniques.":[174],"shows":[178],"that":[179],"there":[180],"are":[181],"not":[182],"significant":[183],"differences":[184],"between":[185],"our":[186],"techniques":[190],"but":[191],"it":[192,202],"provide":[196],"biological-interpretable":[198],"explanation":[199],"how":[201],"classifies":[203],"new":[204],"samples.":[205]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2}],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2016-06-24T00:00:00"}