{"id":"https://openalex.org/W49469456","doi":"https://doi.org/10.2390/biecoll-jib-2011-180","title":"Tracking T and B cells from two-photon microscopy imaging using constrained SMC clusters","display_name":"Tracking T and B cells from two-photon microscopy imaging using constrained SMC clusters","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W49469456","doi":"https://doi.org/10.2390/biecoll-jib-2011-180","mag":"49469456","pmid":"https://pubmed.ncbi.nlm.nih.gov/21926443"},"language":"en","primary_location":{"id":"pmid:21926443","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21926443","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2011-180","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027184111","display_name":"David N. Olivieri","orcid":"https://orcid.org/0000-0001-7862-6917"},"institutions":[{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Olivieri, David","raw_affiliation_strings":["University of Vigo, ESEI, 32004 Ourense, Spain. dnolivieri@gmail.com"],"affiliations":[{"raw_affiliation_string":"University of Vigo, ESEI, 32004 Ourense, Spain. dnolivieri@gmail.com","institution_ids":["https://openalex.org/I6289922"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056874233","display_name":"Jos\u00e9 Faro","orcid":"https://orcid.org/0000-0002-1499-825X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Faro, Jose","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021662239","display_name":"Iv\u00e1n G\u00f3mez-Conde","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gomez-Conde, Ivan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5079541315","display_name":"Carlos E. Tadokoro","orcid":"https://orcid.org/0000-0002-7874-5657"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tadokoro, Carlos E.","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5027184111"],"corresponding_institution_ids":["https://openalex.org/I6289922"],"apc_list":null,"apc_paid":null,"fwci":0.7837,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.7644609,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"8","issue":"3","first_page":"180","last_page":"180"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11266","display_name":"Neuroinflammation and Neurodegeneration Mechanisms","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11266","display_name":"Neuroinflammation and Neurodegeneration Mechanisms","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8384213447570801},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6693609952926636},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.623826801776886},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.49622422456741333},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.40492743253707886},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.3837224841117859},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3668532967567444},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2819528579711914},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2069689929485321},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1909826397895813},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.130202054977417}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8384213447570801},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6693609952926636},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.623826801776886},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.49622422456741333},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.40492743253707886},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.3837224841117859},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3668532967567444},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2819528579711914},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2069689929485321},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1909826397895813},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.130202054977417}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D002465","descriptor_name":"Cell Movement","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002465","descriptor_name":"Cell Movement","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002465","descriptor_name":"Cell Movement","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008198","descriptor_name":"Lymph Nodes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D008198","descriptor_name":"Lymph Nodes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D008198","descriptor_name":"Lymph Nodes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D008198","descriptor_name":"Lymph Nodes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D008198","descriptor_name":"Lymph Nodes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D008198","descriptor_name":"Lymph Nodes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D036641","descriptor_name":"Microscopy, Fluorescence, Multiphoton","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D036641","descriptor_name":"Microscopy, Fluorescence, Multiphoton","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D036641","descriptor_name":"Microscopy, Fluorescence, Multiphoton","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"pmid:21926443","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21926443","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"doi:10.2390/biecoll-jib-2011-180","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2011-180","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2011-180","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2011-180","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1483307070","https://openalex.org/W1578719282","https://openalex.org/W1966574758","https://openalex.org/W1970318694","https://openalex.org/W1971201122","https://openalex.org/W1988754065","https://openalex.org/W1989134497","https://openalex.org/W1999985136","https://openalex.org/W2014113929","https://openalex.org/W2015776459","https://openalex.org/W2023841575","https://openalex.org/W2039072990","https://openalex.org/W2047488334","https://openalex.org/W2052859476","https://openalex.org/W2055047552","https://openalex.org/W2061464631","https://openalex.org/W2063038477","https://openalex.org/W2098613108","https://openalex.org/W2104095591","https://openalex.org/W2105934661","https://openalex.org/W2115443633","https://openalex.org/W2122874647","https://openalex.org/W2125921975","https://openalex.org/W2149928606","https://openalex.org/W2155779547","https://openalex.org/W2161406034","https://openalex.org/W2167670122","https://openalex.org/W3210232381"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2745015246","https://openalex.org/W2014974887","https://openalex.org/W4224214682","https://openalex.org/W2952267456","https://openalex.org/W2020328473","https://openalex.org/W1999458865","https://openalex.org/W3004863783","https://openalex.org/W3118488899","https://openalex.org/W1997449658"],"abstract_inverted_index":{"This":[0],"paper":[1],"describes":[2],"a":[3,16],"novel":[4],"software":[5,34,85],"algorithm,":[6],"called":[7],"constrained":[8],"Sequential":[9],"Monte":[10],"Carlo":[11],"(SMC)":[12],"clusters,":[13],"for":[14,41],"tracking":[15],"large":[17],"collection":[18],"of":[19,45,73,84,107],"individual":[20],"cells":[21],"from":[22,93],"intra-vital":[23],"two-photon":[24],"microscopy":[25],"image":[26],"sequences.":[27],"We":[28,61],"show":[29],"how":[30],"our":[31,66,74],"method":[32],"and":[33,47,68,82,103],"tool,":[35],"implemented":[36],"in":[37,51,98],"python,":[38],"is":[39],"useful":[40],"quantifying":[42],"the":[43,63,71,80],"motility":[44,97],"T":[46,104],"B":[48,99],"lymphocytes":[49,56],"involved":[50],"an":[52],"immune":[53,59],"response":[54],"vs":[55],"under":[57],"non":[58],"conditions.":[60],"describe":[62],"theory":[64],"behind":[65],"algorithm":[67],"briefly":[69],"discuss":[70],"architecture":[72],"software.":[75],"Finally,":[76],"we":[77],"demonstrate":[78],"both":[79],"functionality":[81],"utility":[83],"by":[86],"applying":[87],"it":[88],"to":[89],"two":[90],"practical":[91],"examples":[92],"videos":[94],"displaying":[95],"lymphocyte":[96],"cell":[100,105],"zones":[101,106],"(follicles)":[102],"lymph":[108],"nodes.":[109]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
