{"id":"https://openalex.org/W2188311884","doi":"https://doi.org/10.2390/biecoll-jib-2011-178","title":"Classification methods for finding articles describing protein-protein interactions in PubMed","display_name":"Classification methods for finding articles describing protein-protein interactions in PubMed","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2188311884","doi":"https://doi.org/10.2390/biecoll-jib-2011-178","mag":"2188311884","pmid":"https://pubmed.ncbi.nlm.nih.gov/21926441"},"language":"en","primary_location":{"id":"pmid:21926441","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21926441","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2011-178","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073280030","display_name":"S\u00e9rgio Matos","orcid":"https://orcid.org/0000-0003-1941-3983"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Matos, Sergio","raw_affiliation_strings":["1University of Aveiro, DETI/IEETA, Campus Universit\u00e1rio de Santiago, 3810-193, Aveiro, http://bioinformatics.ua.pt, Portugal"],"affiliations":[{"raw_affiliation_string":"1University of Aveiro, DETI/IEETA, Campus Universit\u00e1rio de Santiago, 3810-193, Aveiro, http://bioinformatics.ua.pt, Portugal","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040524956","display_name":"Jos\u00e9 Lu\u00eds Oliveira","orcid":"https://orcid.org/0000-0002-6672-6176"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Oliveira, Jose Luis","raw_affiliation_strings":["1University of Aveiro, DETI/IEETA, Campus Universit\u00e1rio de Santiago, 3810-193, Aveiro, http://bioinformatics.ua.pt, Portugal"],"affiliations":[{"raw_affiliation_string":"1University of Aveiro, DETI/IEETA, Campus Universit\u00e1rio de Santiago, 3810-193, Aveiro, http://bioinformatics.ua.pt, Portugal","institution_ids":["https://openalex.org/I60858718"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5073280030"],"corresponding_institution_ids":["https://openalex.org/I60858718"],"apc_list":null,"apc_paid":null,"fwci":0.1334,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.5485209,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"8","issue":"3","first_page":"178","last_page":"178"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9628000259399414,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9539999961853027,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.821439266204834},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6330521106719971},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6264299750328064},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5905057191848755},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5882986187934875},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5510342121124268},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.47420361638069153},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.4596952497959137},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4007841944694519},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33598268032073975},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.22045746445655823}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.821439266204834},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6330521106719971},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6264299750328064},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5905057191848755},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5882986187934875},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5510342121124268},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.47420361638069153},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.4596952497959137},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4007841944694519},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33598268032073975},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.22045746445655823},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"pmid:21926441","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21926441","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:5194","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2011/5194/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/article.php?aid=178","raw_type":"Journal Article"},{"id":"doi:10.2390/biecoll-jib-2011-178","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2011-178","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2011-178","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2011-178","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6399999856948853}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1525672751","https://openalex.org/W1976097579","https://openalex.org/W1994306321","https://openalex.org/W1994994140","https://openalex.org/W1996002274","https://openalex.org/W2001668098","https://openalex.org/W2064171774","https://openalex.org/W2081771431","https://openalex.org/W2104768328","https://openalex.org/W2125413176","https://openalex.org/W2127603354","https://openalex.org/W2130930065","https://openalex.org/W2148958646","https://openalex.org/W2153635508","https://openalex.org/W2228162160"],"related_works":["https://openalex.org/W2138279922","https://openalex.org/W1601713026","https://openalex.org/W7848518","https://openalex.org/W2158554964","https://openalex.org/W1541546252","https://openalex.org/W3013121452","https://openalex.org/W111070390","https://openalex.org/W2400806738","https://openalex.org/W219090214","https://openalex.org/W2102026558"],"abstract_inverted_index":{"With":[0],"the":[1,5,11,31,40,44,58,71,105,112,120,138],"rapid":[2],"expansion":[3],"in":[4,10,30,119,124],"number":[6],"of":[7,33,53,60,79,99,109,131,140,172],"published":[8],"papers":[9],"biomedical":[12],"field,":[13],"finding":[14],"relevant":[15,46,84],"articles":[16,61,128],"has":[17,25],"become":[18],"a":[19,169],"demanding":[20],"task":[21],"for":[22,66,87,129,143,159,163],"researchers.":[23],"This":[24],"led":[26],"to":[27,57,126],"increasing":[28],"interest":[29,54],"use":[32,139],"text":[34],"mining":[35],"tools":[36],"that":[37,62,111,153],"help":[38],"search":[39],"literature":[41],"and":[42,151],"identify":[43],"most":[45],"documents":[47,145],"or":[48,85],"information.":[49],"One":[50],"specific":[51],"topic":[52,171],"is":[55],"related":[56],"identification":[59],"might":[63],"be":[64,117,157],"used":[65],"extracting":[67],"protein-protein":[68,89,132,166],"interactions.":[69,133],"Using":[70],"BioCreative":[72],"III":[73],"Article":[74],"Classification":[75],"Task":[76],"dataset,":[77],"composed":[78],"PubMed":[80,149],"abstracts":[81],"classified":[82],"as":[83],"non-relevant":[86],"describing":[88,165],"interactions,":[90],"we":[91,135],"compare":[92],"different":[93,97],"classification":[94,114],"methods":[95],"with":[96],"sets":[98],"features.":[100],"The":[101],"best":[102],"results--area":[103],"under":[104],"interpolated":[106],"precision-recall":[107],"curve":[108],"0.654--indicate":[110],"proposed":[113],"strategy":[115],"could":[116,156],"incorporated":[118],"database":[121],"curation":[122],"workflows":[123],"order":[125],"prioritize":[127],"extraction":[130],"Furthermore,":[134],"also":[136],"analysed":[137],"this":[141,154],"method":[142],"ranking":[144],"resulting":[146],"from":[147],"general":[148,160],"queries,":[150],"propose":[152],"approach":[155],"useful":[158],"researchers":[161],"looking":[162],"publications":[164],"interactions":[167],"within":[168],"particular":[170],"interest.":[173]},"counts_by_year":[{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
