{"id":"https://openalex.org/W2182636428","doi":"https://doi.org/10.2390/biecoll-jib-2011-175","title":"Prognostic Prediction through Biclustering-Based Classification of Clinical Gene Expression Time Series","display_name":"Prognostic Prediction through Biclustering-Based Classification of Clinical Gene Expression Time Series","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2182636428","doi":"https://doi.org/10.2390/biecoll-jib-2011-175","mag":"2182636428","pmid":"https://pubmed.ncbi.nlm.nih.gov/21926438"},"language":"en","primary_location":{"id":"pmid:21926438","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21926438","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2011-175","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084185357","display_name":"Andr\u00e9 V. Carreiro","orcid":"https://orcid.org/0000-0002-4234-5336"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Carreiro, Andre Valerio","raw_affiliation_strings":["Instituto Superior T\u00e9cnico, Technical University of Lisbon, Portugal and Knowledge Discovery and Bioinformatics (KDBIO) group, INESC-ID, Lisbon, Portugal"],"affiliations":[{"raw_affiliation_string":"Instituto Superior T\u00e9cnico, Technical University of Lisbon, Portugal and Knowledge Discovery and Bioinformatics (KDBIO) group, INESC-ID, Lisbon, Portugal","institution_ids":["https://openalex.org/I121345201"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032772499","display_name":"Orlando Anuncia\u00e7\u00e3o","orcid":"https://orcid.org/0000-0002-5929-5523"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anunciacao, Orlando","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057086640","display_name":"Jo\u00e3o Andr\u00e9 Carri\u00e7o","orcid":"https://orcid.org/0000-0002-5274-2722"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Carrico, Joao Andre","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5089809829","display_name":"Sara C. Madeira","orcid":"https://orcid.org/0000-0002-1459-8096"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cordeiro Madeira, Sara","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5084185357"],"corresponding_institution_ids":["https://openalex.org/I121345201"],"apc_list":null,"apc_paid":null,"fwci":1.0671,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.7677052,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"8","issue":"3","first_page":"175","last_page":"175"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biclustering","display_name":"Biclustering","score":0.935198187828064},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6444814205169678},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6204700469970703},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5225298404693604},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5052853226661682},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.4724315106868744},{"id":"https://openalex.org/keywords/personalized-medicine","display_name":"Personalized medicine","score":0.4501214325428009},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38625192642211914},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3701355755329132},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3654210865497589},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3009987473487854},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.23537001013755798},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13479691743850708}],"concepts":[{"id":"https://openalex.org/C144817290","wikidata":"https://www.wikidata.org/wiki/Q2976575","display_name":"Biclustering","level":5,"score":0.935198187828064},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6444814205169678},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6204700469970703},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5225298404693604},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5052853226661682},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.4724315106868744},{"id":"https://openalex.org/C32220436","wikidata":"https://www.wikidata.org/wiki/Q2072214","display_name":"Personalized medicine","level":2,"score":0.4501214325428009},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38625192642211914},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3701355755329132},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3654210865497589},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3009987473487854},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.23537001013755798},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13479691743850708},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.0},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007155","descriptor_name":"Immunologic Factors","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D007155","descriptor_name":"Immunologic Factors","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D007155","descriptor_name":"Immunologic Factors","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009103","descriptor_name":"Multiple Sclerosis","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009103","descriptor_name":"Multiple Sclerosis","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009103","descriptor_name":"Multiple Sclerosis","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009103","descriptor_name":"Multiple Sclerosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009103","descriptor_name":"Multiple Sclerosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009103","descriptor_name":"Multiple Sclerosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009103","descriptor_name":"Multiple Sclerosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009103","descriptor_name":"Multiple Sclerosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009103","descriptor_name":"Multiple Sclerosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016899","descriptor_name":"Interferon-beta","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D016899","descriptor_name":"Interferon-beta","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D016899","descriptor_name":"Interferon-beta","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"pmid:21926438","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21926438","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:5191","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2011/5191/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/article.php?aid=175","raw_type":"Journal Article"},{"id":"doi:10.2390/biecoll-jib-2011-175","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2011-175","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2011-175","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2011-175","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6700000166893005,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W92440651","https://openalex.org/W1549197996","https://openalex.org/W1968295744","https://openalex.org/W2029438113","https://openalex.org/W2040007196","https://openalex.org/W2048915749","https://openalex.org/W2083485745","https://openalex.org/W2108675631","https://openalex.org/W2133271603","https://openalex.org/W2137596615","https://openalex.org/W2144544802","https://openalex.org/W2162262128","https://openalex.org/W2166335393"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4224009465","https://openalex.org/W4286629047","https://openalex.org/W4205958290","https://openalex.org/W3046775127","https://openalex.org/W3107474891","https://openalex.org/W3136151093","https://openalex.org/W4283077296","https://openalex.org/W1527230537","https://openalex.org/W2188922954"],"abstract_inverted_index":{"The":[0,160],"constant":[1],"drive":[2],"towards":[3],"a":[4,25,29,41,134,146],"more":[5],"personalized":[6],"medicine":[7],"led":[8],"to":[9,32,54,76,112,120,126,165],"an":[10,51,66,141],"increasing":[11],"interest":[12],"in":[13,59,82,93,110,169],"temporal":[14,26,72,80],"gene":[15,83,106],"expression":[16,57,84,107],"analyzes.":[17],"It":[18],"is":[19],"now":[20],"broadly":[21],"accepted":[22],"that":[23],"considering":[24],"perpective":[27],"represents":[28],"great":[30],"advantage":[31],"better":[33],"understand":[34],"disease":[35],"progression":[36],"and":[37,62,152],"treatment":[38,123],"results":[39,161],"at":[40],"molecular":[42],"level.":[43],"In":[44,87,137],"this":[45,88,138],"context,":[46],"biclustering":[47],"algorithms":[48],"emerged":[49],"as":[50,65],"important":[52],"tool":[53],"discover":[55],"local":[56],"patterns":[58,81],"biomedical":[60],"applications,":[61],"CCC-Biclustering":[63,90],"arose":[64],"efficient":[67],"algorithm":[68],"relying":[69],"on":[70],"the":[71,114,121,131,157],"nature":[73],"of":[74,116,130,145],"data":[75],"identify":[77],"all":[78],"maximal":[79],"time":[85,108,175],"series.":[86,176],"work,":[89],"was":[91],"integrated":[92],"new":[94],"biclustering-based":[95],"classifiers":[96],"for":[97,156],"prognostic":[98],"prediction.":[99],"As":[100],"case":[101],"study":[102],"we":[103],"analyzed":[104],"multiple":[105],"series":[109],"order":[111],"classify":[113],"response":[115,148],"Multiple":[117],"Sclerosis":[118],"patients":[119,132],"standard":[122],"with":[124],"Interferon-\u03b2,":[125],"which":[127],"nearly":[128],"half":[129],"reveal":[133],"negative":[135],"response.":[136],"scenario,":[139],"using":[140],"effective":[142],"predictive":[143],"model":[144],"patient's":[147],"would":[149],"avoid":[150],"useless":[151],"possibly":[153],"harmful":[154],"therapies":[155],"non-responder":[158],"group.":[159],"revealed":[162],"interesting":[163],"potentialities":[164],"be":[166],"further":[167],"explored":[168],"classification":[170],"problems":[171],"involving":[172],"other":[173],"(clinical)":[174]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
