{"id":"https://openalex.org/W2186769346","doi":"https://doi.org/10.2390/biecoll-jib-2011-167","title":"A generic organ based ontology system, applied to vertebrate heart anatomy, development and physiology","display_name":"A generic organ based ontology system, applied to vertebrate heart anatomy, development and physiology","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2186769346","doi":"https://doi.org/10.2390/biecoll-jib-2011-167","mag":"2186769346","pmid":"https://pubmed.ncbi.nlm.nih.gov/21900708"},"language":"en","primary_location":{"id":"pmid:21900708","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21900708","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hdl.handle.net/1887/3203974","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036637876","display_name":"Laura M.F. Bertens","orcid":"https://orcid.org/0000-0001-9974-9887"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Bertens, Laura M. F.","raw_affiliation_strings":["Imaging & Bioinformatics, LIACS, Leiden University, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imaging & Bioinformatics, LIACS, Leiden University, The Netherlands","institution_ids":["https://openalex.org/I121797337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012252920","display_name":"Joris Slob","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Slob, Joris","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5022631255","display_name":"Fons J. Verbeek","orcid":"https://orcid.org/0000-0003-2445-8158"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Verbeek, Fons J.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5036637876"],"corresponding_institution_ids":["https://openalex.org/I121797337"],"apc_list":null,"apc_paid":null,"fwci":0.133,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.54789004,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"8","issue":"2","first_page":"167","last_page":"167"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9754999876022339,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9333999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/vertebrate","display_name":"Vertebrate","score":0.7423051595687866},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.704788327217102},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6680541038513184},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5533843636512756},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5229490399360657},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34495121240615845},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3298991918563843},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2073739469051361}],"concepts":[{"id":"https://openalex.org/C2778961482","wikidata":"https://www.wikidata.org/wiki/Q25241","display_name":"Vertebrate","level":3,"score":0.7423051595687866},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.704788327217102},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6680541038513184},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5533843636512756},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5229490399360657},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34495121240615845},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3298991918563843},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2073739469051361},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006321","descriptor_name":"Heart","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009928","descriptor_name":"Organ Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014714","descriptor_name":"Vertebrates","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D014714","descriptor_name":"Vertebrates","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D014714","descriptor_name":"Vertebrates","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"pmid:21900708","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21900708","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_3203974","is_oa":true,"landing_page_url":"https://hdl.handle.net/1887/3203974","pdf_url":"https://hdl.handle.net/1887/3203974","source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal Integrative Bioinformatics","raw_type":"Article / Letter to editor"},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:5183","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2011/5183/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/article.php?aid=167","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:ed27a636f3724bd09c2ba63fb70a588a","is_oa":true,"landing_page_url":"https://doaj.org/article/ed27a636f3724bd09c2ba63fb70a588a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 8, Iss 1, Pp 48-65 (2011)","raw_type":"article"},{"id":"pmh:ul:oai:scholarlypublications.universiteitleiden.nl:item_3203974","is_oa":true,"landing_page_url":"http://hdl.handle.net/1887/3203974","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal Integrative Bioinformatics, 8(2)","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.2390/biecoll-jib-2011-167","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2011-167","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_3203974","is_oa":true,"landing_page_url":"https://hdl.handle.net/1887/3203974","pdf_url":"https://hdl.handle.net/1887/3203974","source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal Integrative Bioinformatics","raw_type":"Article / Letter to editor"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.550000011920929}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2186769346.pdf"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W63642558","https://openalex.org/W129220072","https://openalex.org/W387168707","https://openalex.org/W599966374","https://openalex.org/W636264593","https://openalex.org/W961549952","https://openalex.org/W1497070854","https://openalex.org/W1505011908","https://openalex.org/W1521743831","https://openalex.org/W1529522905","https://openalex.org/W1548329420","https://openalex.org/W1562643504","https://openalex.org/W1598058637","https://openalex.org/W1974717034","https://openalex.org/W1981787239","https://openalex.org/W2003961702","https://openalex.org/W2021417739","https://openalex.org/W2030618223","https://openalex.org/W2075339562","https://openalex.org/W2088045259","https://openalex.org/W2096525273","https://openalex.org/W2111394378","https://openalex.org/W2113142309","https://openalex.org/W2124077763","https://openalex.org/W2125349610","https://openalex.org/W2127480960","https://openalex.org/W2129056429","https://openalex.org/W2140034535","https://openalex.org/W2147834895","https://openalex.org/W2148014577","https://openalex.org/W2152722232","https://openalex.org/W2154264935","https://openalex.org/W2154829072","https://openalex.org/W2163670493","https://openalex.org/W2165272943","https://openalex.org/W2166830178","https://openalex.org/W2495004097"],"related_works":["https://openalex.org/W2099737709","https://openalex.org/W1972939812","https://openalex.org/W2362192218","https://openalex.org/W2089474972","https://openalex.org/W2141231399","https://openalex.org/W2106197512","https://openalex.org/W4293328273","https://openalex.org/W2011778299","https://openalex.org/W2966016106","https://openalex.org/W3126691231"],"abstract_inverted_index":{"We":[0,43],"present":[1,53],"a":[2],"novel":[3],"approach":[4,47],"to":[5,48],"modelling":[6],"biological":[7],"information":[8],"using":[9],"ontologies.":[10],"The":[11,30],"system":[12],"interlinks":[13],"three":[14],"ontologies,":[15],"comprising":[16],"anatomical,":[17],"developmental":[18,67],"and":[19,22,52,71],"taxonomical":[20],"information,":[21],"includes":[23],"instances":[24],"of":[25,40,57,60],"structures":[26],"for":[27,34],"different":[28],"species.":[29],"framework":[31],"is":[32],"constructed":[33],"comparative":[35],"analyses":[36],"in":[37],"the":[38,46,49,58,61],"field":[39],"evolutionary":[41],"development.":[42],"have":[44],"applied":[45],"vertebrate":[50],"heart":[51],"four":[54],"case":[55],"studies":[56,70],"functionality":[59],"system,":[62],"focusing":[63],"on":[64],"cross-species":[65],"comparisons,":[66],"studies,":[68],"physiological":[69],"3D":[72],"visualisation.":[73]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
