{"id":"https://openalex.org/W2296444010","doi":"https://doi.org/10.2390/biecoll-jib-2011-165","title":"GMB: An Efficient Query Processor for Biological Data","display_name":"GMB: An Efficient Query Processor for Biological Data","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2296444010","doi":"https://doi.org/10.2390/biecoll-jib-2011-165","mag":"2296444010","pmid":"https://pubmed.ncbi.nlm.nih.gov/21881166"},"language":"en","primary_location":{"id":"pmid:21881166","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21881166","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2011-165","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074032096","display_name":"Kamal Taha","orcid":"https://orcid.org/0000-0002-6674-4614"},"institutions":[{"id":"https://openalex.org/I176601375","display_name":"Khalifa University of Science and Technology","ror":"https://ror.org/05hffr360","country_code":"AE","type":"education","lineage":["https://openalex.org/I176601375"]}],"countries":["AE"],"is_corresponding":true,"raw_author_name":"Taha, Kamal","raw_affiliation_strings":["Khalifa University of Science, Technology and Research. Abu-Dhabi, UAE"],"affiliations":[{"raw_affiliation_string":"Khalifa University of Science, Technology and Research. Abu-Dhabi, UAE","institution_ids":["https://openalex.org/I176601375"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110444284","display_name":"Ramez Elmasri","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Elmasri, Ramez","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5074032096"],"corresponding_institution_ids":["https://openalex.org/I176601375"],"apc_list":null,"apc_paid":null,"fwci":0.3644,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.68454655,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"8","issue":"2","first_page":"165","last_page":"165"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8728848695755005},{"id":"https://openalex.org/keywords/middleware","display_name":"Middleware (distributed applications)","score":0.7662560343742371},{"id":"https://openalex.org/keywords/overhead","display_name":"Overhead (engineering)","score":0.7254898548126221},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.656539797782898},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6046715974807739},{"id":"https://openalex.org/keywords/gateway","display_name":"Gateway (web page)","score":0.5371788740158081},{"id":"https://openalex.org/keywords/default-gateway","display_name":"Default gateway","score":0.5263287425041199},{"id":"https://openalex.org/keywords/grid-computing","display_name":"Grid computing","score":0.5086653828620911},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.44676458835601807},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.2534845471382141},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21994903683662415},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.20935288071632385}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8728848695755005},{"id":"https://openalex.org/C169468491","wikidata":"https://www.wikidata.org/wiki/Q146923","display_name":"Middleware (distributed applications)","level":2,"score":0.7662560343742371},{"id":"https://openalex.org/C2779960059","wikidata":"https://www.wikidata.org/wiki/Q7113681","display_name":"Overhead (engineering)","level":2,"score":0.7254898548126221},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.656539797782898},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6046715974807739},{"id":"https://openalex.org/C2777710495","wikidata":"https://www.wikidata.org/wiki/Q5527195","display_name":"Gateway (web page)","level":2,"score":0.5371788740158081},{"id":"https://openalex.org/C187713609","wikidata":"https://www.wikidata.org/wiki/Q2465461","display_name":"Default gateway","level":2,"score":0.5263287425041199},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.5086653828620911},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.44676458835601807},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.2534845471382141},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21994903683662415},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.20935288071632385},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"pmid:21881166","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21881166","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:5181","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2011/5181/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/article.php?aid=165","raw_type":"Journal Article"},{"id":"doi:10.2390/biecoll-jib-2011-165","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2011-165","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2011-165","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2011-165","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1523826187","https://openalex.org/W1562552760","https://openalex.org/W1598698901","https://openalex.org/W1765265339","https://openalex.org/W1943590385","https://openalex.org/W1960069969","https://openalex.org/W2057613070","https://openalex.org/W2085791927","https://openalex.org/W2119647569","https://openalex.org/W2123568484","https://openalex.org/W2147100344","https://openalex.org/W2149010673","https://openalex.org/W2612388075"],"related_works":["https://openalex.org/W2297181929","https://openalex.org/W170359012","https://openalex.org/W1485814674","https://openalex.org/W2993127670","https://openalex.org/W2106489877","https://openalex.org/W2056445391","https://openalex.org/W2099164262","https://openalex.org/W2068650055","https://openalex.org/W2109038622","https://openalex.org/W2109930839","https://openalex.org/W2188387581","https://openalex.org/W2035100601","https://openalex.org/W2741235415","https://openalex.org/W1439121920","https://openalex.org/W2132649800","https://openalex.org/W3134322586","https://openalex.org/W2335855784","https://openalex.org/W2561334769","https://openalex.org/W1973743551","https://openalex.org/W2943463732"],"abstract_inverted_index":{"Bioinformatics":[0],"applications":[1,126],"manage":[2],"complex":[3],"biological":[4],"data":[5],"stored":[6],"into":[7],"distributed":[8],"and":[9,13,23,52,101,127],"often":[10],"heterogeneous":[11],"databases":[12,19],"require":[14],"large":[15],"computing":[16],"power.":[17],"These":[18],"are":[20,95,104],"too":[21],"big":[22],"complicated":[24],"to":[25,37,49,119],"be":[26],"rapidly":[27],"queried":[28],"every":[29],"time":[30],"a":[31,34,76,117],"user":[32],"submits":[33],"query,":[35],"due":[36],"the":[38,43,46,54,66,87,107],"overhead":[39],"involved":[40],"in":[41,69],"decomposing":[42],"queries,":[44],"sending":[45],"decomposed":[47],"queries":[48],"remote":[50],"databases,":[51],"composing":[53],"results.":[55],"There":[56],"is":[57],"also":[58],"considerable":[59],"communication":[60],"costs":[61],"involved.":[62],"This":[63],"study":[64],"addresses":[65],"mentioned":[67],"problems":[68,84],"Grid-based":[70],"environment":[71],"for":[72],"bioinformatics.":[73],"We":[74,130],"propose":[75],"Grid":[77],"middleware":[78],"called":[79],"GMB":[80,114,132],"that":[81],"alleviates":[82],"these":[83],"by":[85],"caching":[86],"results":[88],"of":[89],"Frequently":[90],"Used":[91],"Queries":[92,94],"(FUQ).":[93],"classified":[96],"based":[97],"on":[98],"their":[99,111],"types":[100],"frequencies.":[102],"FUQ":[103],"answered":[105],"from":[106],"middleware,":[108],"which":[109],"improves":[110],"response":[112],"time.":[113],"acts":[115],"as":[116],"gateway":[118],"TeraGrid":[120,128],"Grid:":[121],"it":[122],"resides":[123],"between":[124],"users&rsquo;":[125],"Grid.":[129],"evaluate":[131],"experimentally.":[133]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
