{"id":"https://openalex.org/W2184359390","doi":"https://doi.org/10.2390/biecoll-jib-2011-156","title":"WIBL: Workbench for Integrative Biological Learning","display_name":"WIBL: Workbench for Integrative Biological Learning","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2184359390","doi":"https://doi.org/10.2390/biecoll-jib-2011-156","mag":"2184359390","pmid":"https://pubmed.ncbi.nlm.nih.gov/21705808"},"language":"en","primary_location":{"id":"pmid:21705808","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21705808","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2011-156","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070584890","display_name":"Victor I. Lesk","orcid":null},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Lesk, Victor","raw_affiliation_strings":["Centre for Integrative Systems Biology, Imperial College, London, UK"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Systems Biology, Imperial College, London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023036725","display_name":"Jan Taubert","orcid":"https://orcid.org/0000-0002-4359-4043"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Taubert, Jan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038901466","display_name":"Chris Rawlings","orcid":"https://orcid.org/0000-0003-3702-1633"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rawlings, Chris","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027656358","display_name":"Stuart J. Dunbar","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dunbar, Stuart","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5076917665","display_name":"Stephen Muggleton","orcid":"https://orcid.org/0000-0001-6061-6104"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Muggleton, Stephen","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5070584890"],"corresponding_institution_ids":["https://openalex.org/I47508984"],"apc_list":null,"apc_paid":null,"fwci":0.7456,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.83467796,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"8","issue":"2","first_page":"156","last_page":"156"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bespoke","display_name":"Bespoke","score":0.9504543542861938},{"id":"https://openalex.org/keywords/workbench","display_name":"Workbench","score":0.9264892339706421},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8315305709838867},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7452999353408813},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.44508644938468933},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43835875391960144},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.40065205097198486},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.20431634783744812}],"concepts":[{"id":"https://openalex.org/C44210515","wikidata":"https://www.wikidata.org/wiki/Q16968978","display_name":"Bespoke","level":2,"score":0.9504543542861938},{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.9264892339706421},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8315305709838867},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7452999353408813},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.44508644938468933},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43835875391960144},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.40065205097198486},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.20431634783744812},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"pmid:21705808","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21705808","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.713.2078","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.713.2078","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.sbg.bio.ic.ac.uk/%7Evil/wiblpaper.pdf","raw_type":"text"},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:5172","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2011/5172/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de","raw_type":"Journal Article"},{"id":"doi:10.2390/biecoll-jib-2011-156","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2011-156","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2011-156","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2011-156","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"score":0.5400000214576721,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2633328597","display_name":null,"funder_award_id":"BB/F006039/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3752877916","display_name":null,"funder_award_id":"BB/F006012/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1530558387","https://openalex.org/W1971676632","https://openalex.org/W1976242144","https://openalex.org/W2031282045","https://openalex.org/W2103970715","https://openalex.org/W2106612397","https://openalex.org/W2149194035","https://openalex.org/W2150908245","https://openalex.org/W2153490111","https://openalex.org/W2155209933","https://openalex.org/W2155331065","https://openalex.org/W2159482845","https://openalex.org/W2163993275","https://openalex.org/W2168103533"],"related_works":["https://openalex.org/W2068146784","https://openalex.org/W7116081","https://openalex.org/W2466452060","https://openalex.org/W1999707737","https://openalex.org/W2138041924","https://openalex.org/W2766979839","https://openalex.org/W2769829722","https://openalex.org/W3019165243","https://openalex.org/W2064867081","https://openalex.org/W2551577365","https://openalex.org/W2619108075","https://openalex.org/W1952352109","https://openalex.org/W1700785270","https://openalex.org/W2055107388","https://openalex.org/W2111523805","https://openalex.org/W3134339829","https://openalex.org/W3037693241","https://openalex.org/W2071395250","https://openalex.org/W2465701464","https://openalex.org/W3025491704"],"abstract_inverted_index":{"The":[0],"construction":[1],"of":[2,8,40],"integrated":[3,44],"datasets":[4],"from":[5],"potentially":[6],"hundreds":[7],"sources":[9],"with":[10],"bespoke":[11],"formats,":[12],"and":[13,17,31,51],"their":[14],"subsequent":[15],"visualization":[16,30],"analysis,":[18],"is":[19],"a":[20,29,54,59],"recurring":[21],"challenge":[22],"in":[23,53],"systems":[24,42,64],"biology.":[25],"We":[26],"present":[27],"WIBL,":[28],"model":[32],"development":[33],"environment":[34],"initially":[35],"geared":[36],"towards":[37],"logic-based":[38],"modelling":[39,52],"biological":[41],"using":[43],"datasets.":[45],"WIBL":[46],"combines":[47],"data":[48],"integration,":[49],"visualisation":[50],"single":[55],"portal-based":[56],"workbench":[57],"providing":[58],"comprehensive":[60],"solution":[61],"for":[62],"interdisciplinary":[63],"biology":[65],"projects.":[66]},"counts_by_year":[{"year":2016,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
