{"id":"https://openalex.org/W163927024","doi":"https://doi.org/10.2390/biecoll-jib-2010-131","title":"Study of the triplet periodicity phase shifts in genes","display_name":"Study of the triplet periodicity phase shifts in genes","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W163927024","doi":"https://doi.org/10.2390/biecoll-jib-2010-131","mag":"163927024","pmid":"https://pubmed.ncbi.nlm.nih.gov/20375465"},"language":"en","primary_location":{"id":"pmid:20375465","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20375465","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2010-131","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001201157","display_name":"Eugene Korotkov","orcid":"https://orcid.org/0000-0003-2960-8936"},"institutions":[{"id":"https://openalex.org/I1313323035","display_name":"Russian Academy of Sciences","ror":"https://ror.org/05qrfxd25","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Korotkov, Eugene V.","raw_affiliation_strings":["Bioinformatics laboratory, Centre of Bioengineering, Russian Academy of Sciences, Prospect 60-tya Oktyabrya 7/1, Moscow 117312, Russia. genekorotkov@gmail.com"],"affiliations":[{"raw_affiliation_string":"Bioinformatics laboratory, Centre of Bioengineering, Russian Academy of Sciences, Prospect 60-tya Oktyabrya 7/1, Moscow 117312, Russia. genekorotkov@gmail.com","institution_ids":["https://openalex.org/I1313323035"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103214178","display_name":"Maria A. Korotkova","orcid":"https://orcid.org/0000-0002-5759-1898"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Korotkova, Maria A.","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5001201157"],"corresponding_institution_ids":["https://openalex.org/I1313323035"],"apc_list":null,"apc_paid":null,"fwci":0.5421,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.64702503,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"7","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9782999753952026,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9682000279426575,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.7364814877510071},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.7050924301147461},{"id":"https://openalex.org/keywords/phase","display_name":"Phase (matter)","score":0.6834314465522766},{"id":"https://openalex.org/keywords/frame","display_name":"Frame (networking)","score":0.6049476265907288},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4054756462574005},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3640327453613281},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3287510275840759},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.31825047731399536},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.21889707446098328},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.08362340927124023},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.07346552610397339}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7364814877510071},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.7050924301147461},{"id":"https://openalex.org/C44280652","wikidata":"https://www.wikidata.org/wiki/Q104837","display_name":"Phase (matter)","level":2,"score":0.6834314465522766},{"id":"https://openalex.org/C126042441","wikidata":"https://www.wikidata.org/wiki/Q1324888","display_name":"Frame (networking)","level":2,"score":0.6049476265907288},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4054756462574005},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3640327453613281},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3287510275840759},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.31825047731399536},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.21889707446098328},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.08362340927124023},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.07346552610397339},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010507","descriptor_name":"Periodicity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010507","descriptor_name":"Periodicity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010507","descriptor_name":"Periodicity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"pmid:20375465","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20375465","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:5031","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2010/5031/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/article.php?aid=131","raw_type":"Journal Article"},{"id":"doi:10.2390/biecoll-jib-2010-131","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2010-131","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2010-131","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2010-131","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.8500000238418579}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":2,"referenced_works":["https://openalex.org/W1481293993","https://openalex.org/W2123838014"],"related_works":["https://openalex.org/W2004069887","https://openalex.org/W2061553209","https://openalex.org/W2123838014","https://openalex.org/W2112140923","https://openalex.org/W2027923354","https://openalex.org/W2169663192","https://openalex.org/W2134529224","https://openalex.org/W2419191827","https://openalex.org/W2065895879","https://openalex.org/W1485415174","https://openalex.org/W2324997768","https://openalex.org/W2367983458","https://openalex.org/W1977214517","https://openalex.org/W1984077069","https://openalex.org/W2095326752","https://openalex.org/W3149220003","https://openalex.org/W2020322194","https://openalex.org/W2417446637","https://openalex.org/W2026493737"],"abstract_inverted_index":{"The":[0,12,47],"definition":[1],"of":[2,6,17,21,38,45,49,53,67,75,83,95],"a":[3,36,42,50],"phase":[4,19,43,51,78,93],"shift":[5,20,44,52],"triplet":[7,54],"periodicity":[8,55],"(TP)":[9],"is":[10,103],"introduced.":[11],"mathematical":[13],"algorithm":[14],"for":[15,59],"detection":[16],"TP":[18,77,96],"nucleotide":[22],"sequences":[23,28],"has":[24,56],"been":[25,57],"developed.":[26],"Gene":[27],"from":[29,64],"Kegg-46":[30],"data":[31],"bank":[32],"were":[33],"analyzed":[34],"with":[35,41],"purpose":[37],"searching":[39],"genes":[40,61,68,102],"TP.":[46],"presence":[48],"shown":[58],"318329":[60],"(approximately":[62],"10%":[63],"the":[65,76,81,92,98],"number":[66],"in":[69,87,101],"Kegg-46).":[70],"We":[71],"suppose":[72],"that":[73],"shifts":[74,82,94,100],"may":[79],"indicate":[80],"reading":[84],"frame":[85,99],"(RF)":[86],"genes.":[88],"A":[89],"relationship":[90],"between":[91],"and":[97],"discussed.":[104]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
