{"id":"https://openalex.org/W2111188793","doi":"https://doi.org/10.2390/biecoll-jib-2010-124","title":"An evaluation of the performance of three semantic background knowledge sources in comparative anatomy","display_name":"An evaluation of the performance of three semantic background knowledge sources in comparative anatomy","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2111188793","doi":"https://doi.org/10.2390/biecoll-jib-2010-124","mag":"2111188793","pmid":"https://pubmed.ncbi.nlm.nih.gov/20375449"},"language":"en","primary_location":{"id":"pmid:20375449","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20375449","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://research.wur.nl/en/publications/an-evaluation-of-the-performance-of-three-semantic-background-kno","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016583315","display_name":"Ernest A. A. Van Ophuizen","orcid":null},"institutions":[{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Van Ophuizen, Ernest A. A.","raw_affiliation_strings":["Laboratory of Bioinformatics, Wageningen University, Droevendaalsesteeg 1, 6708PB, Wageningen, The Netherlands. ln.ruw@nullneziuhpOnav.tsenrE"],"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics, Wageningen University, Droevendaalsesteeg 1, 6708PB, Wageningen, The Netherlands. ln.ruw@nullneziuhpOnav.tsenrE","institution_ids":["https://openalex.org/I913481162"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103572294","display_name":"Jack A. M. Leunissen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Leunissen, Jack A. M.","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5016583315"],"corresponding_institution_ids":["https://openalex.org/I913481162"],"apc_list":null,"apc_paid":null,"fwci":0.5421,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.66872265,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"7","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8384406566619873},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.8263804912567139},{"id":"https://openalex.org/keywords/wordnet","display_name":"WordNet","score":0.7889324426651001},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6223396062850952},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.5962666869163513},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5402848720550537},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.47262927889823914},{"id":"https://openalex.org/keywords/granularity","display_name":"Granularity","score":0.4484376013278961},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.4339922368526459},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34369468688964844},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08822408318519592},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07936251163482666}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8384406566619873},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.8263804912567139},{"id":"https://openalex.org/C157659113","wikidata":"https://www.wikidata.org/wiki/Q533822","display_name":"WordNet","level":2,"score":0.7889324426651001},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6223396062850952},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.5962666869163513},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5402848720550537},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.47262927889823914},{"id":"https://openalex.org/C177774035","wikidata":"https://www.wikidata.org/wiki/Q1246948","display_name":"Granularity","level":2,"score":0.4484376013278961},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.4339922368526459},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34369468688964844},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08822408318519592},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07936251163482666},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000717","descriptor_name":"Anatomy, Comparative","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000717","descriptor_name":"Anatomy, Comparative","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000717","descriptor_name":"Anatomy, Comparative","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"pmid:20375449","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20375449","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:5024","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2010/5024/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/article.php?aid=124","raw_type":"Journal Article"},{"id":"pmh:wur:oai:library.wur.nl:wurpubs/398872","is_oa":true,"landing_page_url":"https://research.wur.nl/en/publications/an-evaluation-of-the-performance-of-three-semantic-background-kno","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of integrative bioinformatics, 7(3), 124 - 124","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.2390/biecoll-jib-2010-124","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2010-124","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"pmh:wur:oai:library.wur.nl:wurpubs/398872","is_oa":true,"landing_page_url":"https://research.wur.nl/en/publications/an-evaluation-of-the-performance-of-three-semantic-background-kno","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of integrative bioinformatics, 7(3), 124 - 124","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W91108659","https://openalex.org/W1483513243","https://openalex.org/W1972644898","https://openalex.org/W2047029075","https://openalex.org/W2081580037","https://openalex.org/W2103987857","https://openalex.org/W2137946607","https://openalex.org/W2159583324","https://openalex.org/W2163685645","https://openalex.org/W2747162042"],"related_works":["https://openalex.org/W1969834784","https://openalex.org/W2163670493","https://openalex.org/W2113142309","https://openalex.org/W2081580037","https://openalex.org/W2038721957","https://openalex.org/W1970264778","https://openalex.org/W1993451156","https://openalex.org/W3146717817","https://openalex.org/W1978198811","https://openalex.org/W1996989641","https://openalex.org/W2060593260","https://openalex.org/W2220018854","https://openalex.org/W2759622564","https://openalex.org/W1995642679","https://openalex.org/W18410054","https://openalex.org/W1487801630","https://openalex.org/W2388739928","https://openalex.org/W2596568673","https://openalex.org/W2303098424","https://openalex.org/W2277537086"],"abstract_inverted_index":{"In":[0],"this":[1],"paper":[2],"we":[3,93],"evaluate":[4],"the":[5,37,48],"performance":[6],"and":[7,31,42,88],"usefulness":[8],"of":[9,40,50,72,86],"three":[10,79],"semantic":[11],"background":[12],"knowledge":[13,52],"sources":[14,25,53],"for":[15],"predicting":[16],"synonymous":[17],"anatomical":[18,38],"terms":[19,85],"across":[20],"species":[21],"boundaries.":[22],"The":[23],"reference":[24],"under":[26],"evaluation":[27],"are":[28,34],"UMLS,":[29],"FMA-OBO":[30],"WordNet,":[32],"which":[33,64],"applied":[35],"to":[36,55,101],"ontologies":[39],"mouse":[41],"zebrafish.":[43],"Our":[44],"results":[45,92],"show":[46],"that":[47,77,95],"use":[49],"specialized":[51],"leads":[54],"highly":[56],"accurate":[57],"predictions,":[58],"verified":[59],"through":[60],"complete":[61],"manual":[62],"curation,":[63],"can":[65,98],"be":[66,99],"further":[67],"improved":[68],"by":[69],"combining":[70],"multiple":[71],"said":[73],"sources.":[74],"We":[75],"argue":[76],"these":[78,96],"references":[80,97],"complement":[81],"each":[82],"other":[83],"in":[84],"granularity":[87],"specificity.":[89],"From":[90],"our":[91],"conclude":[94],"used":[100],"create":[102],"reliable":[103],"ontology":[104],"mappings":[105],"with":[106],"minimal":[107],"human":[108],"supervision.":[109]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
