{"id":"https://openalex.org/W172862383","doi":"https://doi.org/10.2390/biecoll-jib-2010-123","title":"MEMOPS: Data modelling and automatic code generation","display_name":"MEMOPS: Data modelling and automatic code generation","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W172862383","doi":"https://doi.org/10.2390/biecoll-jib-2010-123","mag":"172862383","pmid":"https://pubmed.ncbi.nlm.nih.gov/20375445"},"language":"en","primary_location":{"id":"pmid:20375445","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20375445","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2010-123","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111914844","display_name":"Rasmus H. Fogh","orcid":null},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Fogh, Rasmus H.","raw_affiliation_strings":["Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA (UK)"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA (UK)","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038747965","display_name":"Wayne Boucher","orcid":"https://orcid.org/0000-0001-7969-2334"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Boucher, Wayne","raw_affiliation_strings":["University of Cambridge,"],"affiliations":[{"raw_affiliation_string":"University of Cambridge,","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045491942","display_name":"John Ionides","orcid":null},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ionides, John M. C.","raw_affiliation_strings":["University of Cambridge,"],"affiliations":[{"raw_affiliation_string":"University of Cambridge,","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050454940","display_name":"Wim Vranken","orcid":"https://orcid.org/0000-0001-7470-4324"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vranken, Wim F.","raw_affiliation_strings":["Department of Bio-engineering Sciences"],"affiliations":[{"raw_affiliation_string":"Department of Bio-engineering Sciences","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052265113","display_name":"Tim J. Stevens","orcid":"https://orcid.org/0000-0001-6475-2074"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stevens, Tim J.","raw_affiliation_strings":["University of Cambridge,"],"affiliations":[{"raw_affiliation_string":"University of Cambridge,","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076130320","display_name":"Ernest D. Laue","orcid":"https://orcid.org/0000-0002-7476-4148"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Laue, Ernest D.","raw_affiliation_strings":["University of Cambridge,"],"affiliations":[{"raw_affiliation_string":"University of Cambridge,","institution_ids":["https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5111914844"],"corresponding_institution_ids":["https://openalex.org/I241749"],"apc_list":null,"apc_paid":null,"fwci":4.2877,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.94097427,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"7","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9434999823570251,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8559812307357788},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7065621018409729},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.673677384853363},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4556598365306854},{"id":"https://openalex.org/keywords/codebase","display_name":"Codebase","score":0.4423624277114868},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4305747151374817},{"id":"https://openalex.org/keywords/data-file","display_name":"Data file","score":0.4300194978713989},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.4298432469367981},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.41940829157829285},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4171098470687866},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.413272500038147},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.22533604502677917}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8559812307357788},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7065621018409729},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.673677384853363},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4556598365306854},{"id":"https://openalex.org/C51929080","wikidata":"https://www.wikidata.org/wiki/Q2425187","display_name":"Codebase","level":3,"score":0.4423624277114868},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4305747151374817},{"id":"https://openalex.org/C171730128","wikidata":"https://www.wikidata.org/wiki/Q5227290","display_name":"Data file","level":2,"score":0.4300194978713989},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.4298432469367981},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.41940829157829285},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4171098470687866},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.413272500038147},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.22533604502677917}],"mesh":[{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D009682","descriptor_name":"Magnetic Resonance Spectroscopy","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"pmid:20375445","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20375445","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.459.6004","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.459.6004","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://biecoll.ub.uni-bielefeld.de/volltexte/2010/5023/pdf/jib_123.pdf","raw_type":"text"},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:5023","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2010/5023/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/article.php?aid=123","raw_type":"Journal Article"},{"id":"pmh:oai:vubissmart:VUBISSMART:2000:77737","is_oa":false,"landing_page_url":"https://biblio.vub.ac.be/vubir/memops-data-modelling-and-automatic-code-generation(eb5a36ea-4331-423c-b86c-c295f506bb4d).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306402573","display_name":"VUBIR (Vrije Universiteit Brussel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I13469542","host_organization_name":"Vrije Universiteit Brussel","host_organization_lineage":["https://openalex.org/I13469542"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"doi:10.2390/biecoll-jib-2010-123","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2010-123","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2010-123","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2010-123","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6299999952316284,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G3712750624","display_name":null,"funder_award_id":"BB/H004130/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8595602620","display_name":null,"funder_award_id":"BB/E005071/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1511313526","https://openalex.org/W1533059251","https://openalex.org/W1995017064","https://openalex.org/W1998017916","https://openalex.org/W2001641653","https://openalex.org/W2009517804","https://openalex.org/W2017421343","https://openalex.org/W2022381538","https://openalex.org/W2030728145","https://openalex.org/W2053158671","https://openalex.org/W2058484974","https://openalex.org/W2061575020","https://openalex.org/W2135338948","https://openalex.org/W2169707043","https://openalex.org/W2170338669"],"related_works":["https://openalex.org/W2169707043","https://openalex.org/W2950174788","https://openalex.org/W2416343268","https://openalex.org/W2147005978","https://openalex.org/W2759709744","https://openalex.org/W2809246376","https://openalex.org/W1614009993","https://openalex.org/W2795293166","https://openalex.org/W149556222","https://openalex.org/W2530855438","https://openalex.org/W1987317724","https://openalex.org/W2797303080","https://openalex.org/W2592524488","https://openalex.org/W2186090899","https://openalex.org/W2996334868","https://openalex.org/W2295012303","https://openalex.org/W1987566697","https://openalex.org/W2621267933","https://openalex.org/W1966110935","https://openalex.org/W307909074"],"abstract_inverted_index":{"In":[0],"recent":[1],"years":[2],"the":[3,11,37,91,114,147,153,169,177,201,230],"amount":[4],"of":[5,36,49,113],"biological":[6],"data":[7,41,51,122,128,139,188,202],"has":[8],"exploded":[9],"to":[10,39,72,96,119,193,222],"point":[12],"where":[13],"much":[14],"useful":[15],"information":[16],"can":[17,198],"only":[18],"be":[19,235],"extracted":[20],"by":[21,30],"complex":[22,195,215],"computational":[23],"analyses.":[24],"Such":[25],"analyses":[26],"are":[27],"greatly":[28],"facilitated":[29],"metadata":[31,87,115],"standards,":[32,88],"both":[33,86],"in":[34,47,52,117,133,204,213,224,241],"terms":[35,48],"ability":[38],"compare":[40],"originating":[42],"from":[43],"different":[44],"sources,":[45],"and":[46,80,89,124,136,138,218,247],"exchanging":[50],"standard":[53],"forms,":[54],"e.g.":[55],"when":[56],"running":[57],"processes":[58],"on":[59,67],"a":[60,101,106,183,186,205,214],"distributed":[61],"computing":[62],"infrastructure.":[63],"However,":[64],"standards":[65,196],"thrive":[66],"stability":[68],"whereas":[69],"science":[70],"tends":[71],"constantly":[73],"move,":[74],"with":[75,238],"new":[76],"methods":[77],"being":[78],"developed":[79],"old":[81],"ones":[82],"modified.":[83],"Therefore":[84],"maintaining":[85],"all":[90,200,211],"code":[92,157,170,180,233],"that":[93,108,168,197],"is":[94,100,105,171],"required":[95],"make":[97],"them":[98,209,220],"useful,":[99],"non-trivial":[102],"problem.":[103],"Memops":[104,165,231],"framework":[107],"uses":[109],"an":[110,225],"abstract":[111],"definition":[112],"(described":[116],"UML)":[118],"generate":[120],"internal":[121],"structures":[123],"subroutine":[125],"libraries":[126,151],"for":[127,155,158,179],"access":[129],"(application":[130],"programming":[131],"interfaces--APIs--currently":[132],"Python,":[134],"C":[135],"Java)":[137],"storage":[140],"(in":[141],"XML":[142],"files":[143],"or":[144,163],"databases).":[145],"For":[146],"individual":[148],"project":[149],"these":[150],"obviate":[152],"need":[154,178],"writing":[156],"input":[159],"parsing,":[160],"validity":[161],"checking":[162],"output.":[164],"also":[166],"ensures":[167],"always":[172],"internally":[173],"consistent,":[174],"massively":[175],"reducing":[176],"reorganisation.":[181],"Across":[182],"scientific":[184,206],"domain":[185],"Memops-supported":[187],"model":[189],"makes":[190],"it":[191],"easier":[192],"support":[194],"capture":[199],"produced":[203],"area,":[207],"share":[208],"among":[210],"programs":[212],"software":[216],"pipeline,":[217],"carry":[219],"forward":[221],"deposition":[223],"archive.":[226],"The":[227],"principles":[228],"behind":[229],"generation":[232],"will":[234],"presented,":[236],"along":[237],"example":[239],"applications":[240],"Nuclear":[242],"Magnetic":[243],"Resonance":[244],"(NMR)":[245],"spectroscopy":[246],"structural":[248],"biology.":[249]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
