{"id":"https://openalex.org/W173489286","doi":"https://doi.org/10.2390/biecoll-jib-2010-119","title":"Quality controls in integrative approaches to detect errors and inconsistencies in biological databases","display_name":"Quality controls in integrative approaches to detect errors and inconsistencies in biological databases","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W173489286","doi":"https://doi.org/10.2390/biecoll-jib-2010-119","mag":"173489286","pmid":"https://pubmed.ncbi.nlm.nih.gov/20375464"},"language":"en","primary_location":{"id":"pmid:20375464","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20375464","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2010-119","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028164671","display_name":"Giorgio Ghisalberti","orcid":null},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Ghisalberti, Giorgio","raw_affiliation_strings":["Electronics and Information Department, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy"],"affiliations":[{"raw_affiliation_string":"Electronics and Information Department, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085346183","display_name":"Marco Masseroli","orcid":"https://orcid.org/0000-0003-2574-1174"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Masseroli, Marco","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5089508057","display_name":"Luca Tettamanti","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tettamanti, Luca","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5028164671"],"corresponding_institution_ids":["https://openalex.org/I93860229"],"apc_list":null,"apc_paid":null,"fwci":1.2198,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.76948251,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"7","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7754119038581848},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.6366609334945679},{"id":"https://openalex.org/keywords/data-warehouse","display_name":"Data warehouse","score":0.6287961602210999},{"id":"https://openalex.org/keywords/data-quality","display_name":"Data quality","score":0.6070641279220581},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.6052311062812805},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5912563800811768},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5674495697021484},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5085691213607788},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3922581672668457},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3222612142562866}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7754119038581848},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.6366609334945679},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.6287961602210999},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.6070641279220581},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.6052311062812805},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5912563800811768},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5674495697021484},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5085691213607788},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3922581672668457},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3222612142562866},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":4,"locations":[{"id":"pmid:20375464","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20375464","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:5019","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2010/5019/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/article.php?aid=119","raw_type":"Journal Article"},{"id":"pmh:oai:re.public.polimi.it:11311/570146","is_oa":false,"landing_page_url":"http://hdl.handle.net/11311/570146","pdf_url":null,"source":{"id":"https://openalex.org/S4306400312","display_name":"Virtual Community of Pathological Anatomy (University of Castilla La Mancha)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79189158","host_organization_name":"University of Castilla-La Mancha","host_organization_lineage":["https://openalex.org/I79189158"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.2390/biecoll-jib-2010-119","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2010-119","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2010-119","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2010-119","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"display_name":"Life below water","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/14"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1503723567","https://openalex.org/W1539265392","https://openalex.org/W1730348256","https://openalex.org/W1835571316","https://openalex.org/W1983594585","https://openalex.org/W2001230248","https://openalex.org/W2004291985","https://openalex.org/W2051795211","https://openalex.org/W2052483969","https://openalex.org/W2065702910","https://openalex.org/W2065753378","https://openalex.org/W2094258495","https://openalex.org/W2103017472","https://openalex.org/W2107580398","https://openalex.org/W2107819366","https://openalex.org/W2107903949","https://openalex.org/W2108781775","https://openalex.org/W2113142309","https://openalex.org/W2123060905","https://openalex.org/W2131482353","https://openalex.org/W2160948978","https://openalex.org/W2161062388"],"related_works":["https://openalex.org/W1550512453","https://openalex.org/W3153302240","https://openalex.org/W2994250432","https://openalex.org/W2039506348","https://openalex.org/W1835571316","https://openalex.org/W1991246845","https://openalex.org/W2185314961","https://openalex.org/W2181308272","https://openalex.org/W2793445098","https://openalex.org/W56862201","https://openalex.org/W3022867909","https://openalex.org/W2553869903","https://openalex.org/W2054091742","https://openalex.org/W2007671792","https://openalex.org/W2143564696","https://openalex.org/W2737115948","https://openalex.org/W2091686837","https://openalex.org/W190293688","https://openalex.org/W36505671","https://openalex.org/W2129984117"],"abstract_inverted_index":{"Numerous":[0],"biomolecular":[1,126,156],"data":[2,23,36,45,53,71,138,192,199,211,219,235,240,247,253,269,281,290,309,313,319,333,355],"are":[3,7,17,24,161],"available,":[4,356],"but":[5],"they":[6],"scattered":[8],"in":[9,37,100,194,278,288,310,340,357],"many":[10],"databases":[11,275,329],"and":[12,27,30,47,110,114,136,147,152,159,163,171,184,226,237,244,250,256,276,298,321],"only":[13],"some":[14],"of":[15,34,69,112,117,132,173,191,197,223,252,268,293,296,307,326,343,353],"them":[16,339],"curated":[18],"by":[19,124],"experts.":[20],"Most":[21],"available":[22,35,103,270],"computationally":[25],"derived":[26],"include":[28],"errors":[29,225,297,320],"inconsistencies.":[31,227],"Effective":[32],"use":[33,260],"order":[38,177],"to":[39,61,81,178,185,215,264,303,323,349,361],"derive":[40],"new":[41],"knowledge":[42],"hence":[43],"requires":[44],"integration":[46,54],"quality":[48,84,190,212,267,306,352],"improvement.":[49],"Many":[50],"approaches":[51],"for":[52,220],"have":[55],"been":[56],"proposed.":[57],"Data":[58],"warehousing":[59],"seams":[60],"be":[62],"the":[63,77,142,182,187,198,217,231,261,266,279,308,311,324,327,332,344,351,354,358,362],"most":[64,78],"adequate":[65],"when":[66],"comprehensive":[67,83,107],"analysis":[68,109],"integrated":[70,87,193,218,277],"is":[72,130],"required.":[73],"This":[74,347],"makes":[75],"it":[76],"suitable":[79],"also":[80],"implement":[82],"controls":[85,233,263],"on":[86],"data.":[88],"We":[89,259,315],"previously":[90],"developed":[91,202],"GFINDer":[92,128,280,312],"(http://www.bioinformatics.polimi.it/GFINDer/),":[93],"a":[94,133,221,291],"web":[95],"system":[96],"that":[97],"supports":[98],"scientists":[99],"effectively":[101],"using":[102],"information.":[104],"It":[105],"allows":[106],"statistical":[108],"mining":[111],"functional":[113],"phenotypic":[115],"annotations":[116],"gene":[118,151,153],"lists,":[119],"such":[120],"as":[121],"those":[122],"identified":[123,287,318],"high-throughput":[125],"experiments.":[127],"backend":[129],"composed":[131],"multi-organism":[134],"genomic":[135],"proteomic":[137],"warehouse":[139],"(GPDW).":[140],"Within":[141,206],"GPDW,":[143],"several":[144,174,203,272],"controlled":[145],"terminologies":[146],"ontologies,":[148],"which":[149],"describe":[150],"product":[154],"related":[155],"processes,":[157],"functions":[158],"phenotypes,":[160],"imported":[162],"integrated,":[164],"together":[165],"with":[166,169],"their":[167],"associations":[168],"genes":[170],"proteins":[172],"organisms.":[175],"In":[176],"ease":[179],"maintaining":[180],"updated":[181],"GPDW":[183],"ensure":[186,304],"best":[188],"possible":[189,224],"subsequent":[195,341],"updating":[196,342],"warehouse,":[200],"we":[201,208,286],"automatic":[204],"procedures.":[205],"them,":[207],"implemented":[209,232,262],"numerous":[210],"control":[213],"techniques":[214],"test":[216],"variety":[222,292],"Among":[228],"other":[229],"features,":[230],"check":[234],"structure":[236],"completeness,":[238],"ontological":[239],"consistency,":[241],"ID":[242],"format":[243],"evolution,":[245],"unexpected":[246],"quantification":[248],"values,":[249],"consistency":[251],"from":[254,271,330],"single":[255],"multiple":[257],"sources.":[258],"analyze":[265],"different":[273,294],"biological":[274],"warehouse.":[282,314],"By":[283],"doing":[284],"so,":[285],"these":[289],"types":[295],"inconsistencies;":[299],"this":[300],"enables":[301],"us":[302],"good":[305],"reported":[316],"all":[317],"inconsistencies":[322],"curators":[325],"original":[328,345,359],"where":[331],"were":[334],"retrieved,":[335],"who":[336],"mainly":[337],"corrected":[338],"database.":[346],"contributed":[348],"improve":[350],"databases,":[360],"whole":[363],"scientific":[364],"community.":[365]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
