{"id":"https://openalex.org/W166100103","doi":"https://doi.org/10.2390/biecoll-jib-2010-110","title":"The LAILAPS Search Engine: Relevance Ranking in Life Science Databases","display_name":"The LAILAPS Search Engine: Relevance Ranking in Life Science Databases","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W166100103","doi":"https://doi.org/10.2390/biecoll-jib-2010-110","mag":"166100103","pmid":"https://pubmed.ncbi.nlm.nih.gov/20134080"},"language":"en","primary_location":{"id":"pmid:20134080","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20134080","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2010-110","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091392435","display_name":"Matthias Lange","orcid":"https://orcid.org/0000-0002-4316-078X"},"institutions":[{"id":"https://openalex.org/I4210127902","display_name":"Leibniz Institute of Plant Genetics and Crop Plant Research","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Lange, Matthias","raw_affiliation_strings":["Research Group Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany. lange@ipk-gatersleben.de"],"affiliations":[{"raw_affiliation_string":"Research Group Bioinformatics and Information Technology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany. lange@ipk-gatersleben.de","institution_ids":["https://openalex.org/I4210127902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027457595","display_name":"Karl Spies","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Spies, Karl","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087225633","display_name":"Joachim W. Bargsten","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bargsten, Joachim","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011466640","display_name":"Gregor Haberhauer","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Haberhauer, Gregor","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040908598","display_name":"Matthias Klapperst\u00fcck","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Klapperstuck, Matthias","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082814373","display_name":"Michael Leps","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Leps, Michael","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035900405","display_name":"Christian Weinel","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Weinel, Christian","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051315814","display_name":"R\u00f6bbe W\u00fcnschiers","orcid":"https://orcid.org/0000-0002-2824-4707"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wunschiers, Robbe","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020632798","display_name":"Mandy Weissbach","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Weissbach, Mandy","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019975443","display_name":"J. D. Stein","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stein, Jens","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5058475324","display_name":"Uwe Scholz","orcid":"https://orcid.org/0000-0001-6113-3518"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Scholz, Uwe","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5091392435"],"corresponding_institution_ids":["https://openalex.org/I4210127902"],"apc_list":null,"apc_paid":null,"fwci":1.2199,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.7694886,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"7","issue":"2","first_page":"110","last_page":"110"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.9060283899307251},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.832315981388092},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8007051944732666},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.647431492805481},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.5338754653930664},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5004112720489502},{"id":"https://openalex.org/keywords/relevance-feedback","display_name":"Relevance feedback","score":0.48740652203559875},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4475541412830353},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.4323100745677948},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.42545628547668457},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.41678786277770996},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21279782056808472}],"concepts":[{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.9060283899307251},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.832315981388092},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8007051944732666},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.647431492805481},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.5338754653930664},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5004112720489502},{"id":"https://openalex.org/C2779532271","wikidata":"https://www.wikidata.org/wiki/Q445558","display_name":"Relevance feedback","level":4,"score":0.48740652203559875},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4475541412830353},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.4323100745677948},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.42545628547668457},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.41678786277770996},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21279782056808472},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C1667742","wikidata":"https://www.wikidata.org/wiki/Q10927554","display_name":"Image retrieval","level":3,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"pmid:20134080","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20134080","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.462.2994","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.462.2994","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.imbio.de/journal/articles/pdf/jib-110.pdf","raw_type":"text"},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:2053","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2010/2053/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/article.php?aid=110","raw_type":"Journal Article"},{"id":"doi:10.2390/biecoll-jib-2010-110","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2010-110","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2010-110","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2010-110","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.46000000834465027,"display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W2100895966","https://openalex.org/W2103470346","https://openalex.org/W2108781775","https://openalex.org/W2121672615","https://openalex.org/W2125771191","https://openalex.org/W2126742636","https://openalex.org/W2132784310","https://openalex.org/W2141869602","https://openalex.org/W2143331230","https://openalex.org/W2159628188","https://openalex.org/W2162136032","https://openalex.org/W2168507922","https://openalex.org/W2410164138","https://openalex.org/W2441941171"],"related_works":["https://openalex.org/W2294459391","https://openalex.org/W2183374463","https://openalex.org/W2086253379","https://openalex.org/W1984668040","https://openalex.org/W2293748070","https://openalex.org/W2023217766","https://openalex.org/W2890403044","https://openalex.org/W104148947","https://openalex.org/W4232060929","https://openalex.org/W166100103"],"abstract_inverted_index":{"Search":[0],"engines":[1],"and":[2,87,90,110,121,142,211],"retrieval":[3],"systems":[4],"are":[5,104],"popular":[6],"tools":[7],"at":[8,221],"a":[9,23,30,65,72,117,122,149,164,179,190],"life":[10,24,57,139],"science":[11,25,58,140],"desktop.":[12],"The":[13,60],"manual":[14],"inspection":[15],"of":[16,18,39,151,194],"hundreds":[17],"database":[19,156,195],"entries,":[20],"that":[21,95],"reflect":[22],"concept":[26,61],"or":[27,183],"fact,":[28],"is":[29,62,215],"time":[31],"intensive":[32],"daily":[33],"work.":[34],"Hereby,":[35],"not":[36],"the":[37,44,52,205,208],"number":[38],"query":[40],"results":[41],"matters,":[42],"but":[43],"relevance":[45,70,79,97,162,170,187,192],"does.":[46],"In":[47,200],"this":[48,201],"paper,":[49,202],"we":[50,203],"present":[51,204],"LAILAPS":[53,127,206,214],"search":[54,134],"engine":[55,135],"for":[56,69,136,143,178,218],"databases.":[59,147],"to":[63,76],"combine":[64],"novel":[66],"feature":[67],"model":[68,77],"ranking,":[71],"machine":[73],"learning":[74],"approach":[75],"user":[78,84,93,101,161,168],"profiles,":[80],"ranking":[81,193],"improvement":[82],"by":[83,99,114],"feedback":[85],"tracking":[86,100],"an":[88],"intuitive":[89],"slim":[91],"web":[92],"interface,":[94],"estimates":[96],"rank":[98],"interactions.":[102],"Queries":[103],"formulated":[105],"as":[106,133,175],"simple":[107,123],"keyword":[108],"lists":[109],"will":[111],"be":[112,130],"expanded":[113],"synonyms.":[115],"Supporting":[116],"flexible":[118],"text":[119],"index":[120],"data":[124,177,220],"import":[125],"format,":[126],"can":[128],"easily":[129],"used":[131],"both":[132],"comprehensive":[137],"integrated":[138],"databases":[141],"small":[144],"in-house":[145],"project":[146],"With":[148],"set":[150],"features,":[152],"extracted":[153],"from":[154],"each":[155],"hit":[157],"in":[158],"combination":[159],"with":[160],"preferences,":[163],"neural":[165,181],"network":[166,182],"predicts":[167],"specific":[169],"scores.":[171],"Using":[172],"expert":[173],"knowledge":[174],"training":[176,188],"predefined":[180],"using":[184],"users":[185],"own":[186],"sets,":[189],"reliable":[191],"hits":[196],"has":[197],"been":[198],"implemented.":[199],"system,":[207],"concepts,":[209],"benchmarks":[210],"use":[212],"cases.":[213],"public":[216],"available":[217],"SWISSPROT":[219],"http://lailaps.ipk-gatersleben.de.":[222]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
