{"id":"https://openalex.org/W2153928177","doi":"https://doi.org/10.2390/biecoll-jib-2008-104","title":"GOblet: Annotation of anonymous sequence data with Gene Ontology and Pathway terms","display_name":"GOblet: Annotation of anonymous sequence data with Gene Ontology and Pathway terms","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W2153928177","doi":"https://doi.org/10.2390/biecoll-jib-2008-104","mag":"2153928177","pmid":"https://pubmed.ncbi.nlm.nih.gov/20134064"},"language":"en","primary_location":{"id":"pmid:20134064","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20134064","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2008-104","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030037715","display_name":"Detlef Groth","orcid":"https://orcid.org/0000-0002-9441-3978"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Groth, Detlef","raw_affiliation_strings":["Max-Planck-Society"],"affiliations":[{"raw_affiliation_string":"Max-Planck-Society","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026752416","display_name":"Stefanie Hartmann","orcid":null},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hartmann, Stefanie","raw_affiliation_strings":["Max-Planck-Society"],"affiliations":[{"raw_affiliation_string":"Max-Planck-Society","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009532945","display_name":"G. V. Panopoulou","orcid":"https://orcid.org/0000-0001-7482-5759"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Panopoulou, Georgia","raw_affiliation_strings":["Evolution and Development (Albert Poustka), Dept. of Vertebrate Genomics (Head: Hans Lehrach), Max Planck Institute for Molecular Genetics, Max Planck Society"],"affiliations":[{"raw_affiliation_string":"Evolution and Development (Albert Poustka), Dept. of Vertebrate Genomics (Head: Hans Lehrach), Max Planck Institute for Molecular Genetics, Max Planck Society","institution_ids":["https://openalex.org/I4210142260","https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007743755","display_name":"Albert J. Poustka","orcid":null},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]},{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Poustka, Albert J.","raw_affiliation_strings":["Evolution and Development (Albert Poustka), Dept. of Vertebrate Genomics (Head: Hans Lehrach), Max Planck Institute for Molecular Genetics, Max Planck Society"],"affiliations":[{"raw_affiliation_string":"Evolution and Development (Albert Poustka), Dept. of Vertebrate Genomics (Head: Hans Lehrach), Max Planck Institute for Molecular Genetics, Max Planck Society","institution_ids":["https://openalex.org/I4210142260","https://openalex.org/I149899117"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041073451","display_name":"Steffen Hennig","orcid":null},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hennig, Steffen","raw_affiliation_strings":["\u2022#TAB#Dept. of Vertebrate Genomics (Head: Hans Lehrach), Max Planck Institute for Molecular Genetics, Max Planck Society"],"affiliations":[{"raw_affiliation_string":"\u2022#TAB#Dept. of Vertebrate Genomics (Head: Hans Lehrach), Max Planck Institute for Molecular Genetics, Max Planck Society","institution_ids":["https://openalex.org/I4210142260","https://openalex.org/I149899117"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5030037715"],"corresponding_institution_ids":["https://openalex.org/I149899117"],"apc_list":null,"apc_paid":null,"fwci":0.1383,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.56407227,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"5","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8416324853897095},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.6011189222335815},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5938289761543274},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.5677367448806763},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.5054242610931396},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.49078068137168884},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.46152395009994507},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4426492154598236},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37308943271636963},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37203121185302734},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13527479767799377},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11757838726043701}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8416324853897095},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.6011189222335815},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5938289761543274},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.5677367448806763},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.5054242610931396},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.49078068137168884},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.46152395009994507},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4426492154598236},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37308943271636963},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37203121185302734},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13527479767799377},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11757838726043701},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"pmid:20134064","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20134064","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.492.2402","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.492.2402","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/articles/pdf/jib-104.pdf","raw_type":"text"},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:298","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2008/298/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/index.php?paper_id=104","raw_type":"Journal Article"},{"id":"pmh:oai:edoc.mpg.de:408354","is_oa":false,"landing_page_url":"http://edoc.mpg.de/408354","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, v.5, 104-104 (2008)","raw_type":"Article"},{"id":"pmh:oai:pure.mpg.de:item_1584418","is_oa":false,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-0010-7F3A-1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.2390/biecoll-jib-2008-104","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2008-104","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2008-104","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2008-104","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.44999998807907104,"display_name":"Partnerships for the goals"},{"id":"https://metadata.un.org/sdg/9","score":0.41999998688697815,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1535641839","https://openalex.org/W1977556410","https://openalex.org/W1986800180","https://openalex.org/W2002374079","https://openalex.org/W2065589669","https://openalex.org/W2068886104","https://openalex.org/W2085032889","https://openalex.org/W2091448229","https://openalex.org/W2102037268","https://openalex.org/W2102732162","https://openalex.org/W2105106534","https://openalex.org/W2113142309","https://openalex.org/W2119027485","https://openalex.org/W2119195082","https://openalex.org/W2123060905","https://openalex.org/W2126544665","https://openalex.org/W2127563440","https://openalex.org/W2128601422","https://openalex.org/W2136190119","https://openalex.org/W2137653635","https://openalex.org/W2143210482","https://openalex.org/W2146119511","https://openalex.org/W2147714160","https://openalex.org/W2155290699","https://openalex.org/W2158714788","https://openalex.org/W2167455933","https://openalex.org/W2315135172","https://openalex.org/W2604823638"],"related_works":["https://openalex.org/W1819775448","https://openalex.org/W601931663","https://openalex.org/W1502647431","https://openalex.org/W2125384324","https://openalex.org/W2072416114","https://openalex.org/W3005032790","https://openalex.org/W2794999350","https://openalex.org/W2153928177","https://openalex.org/W11729235","https://openalex.org/W4256346769"],"abstract_inverted_index":{"The":[0,118,161,189],"functional":[1],"annotation":[2,34],"of":[3,15,35,47,120,133,143,164],"genomic":[4],"data":[5,88,149],"has":[6,168],"become":[7],"a":[8,28,109,157,181],"major":[9],"task":[10],"for":[11,32,112,137],"the":[12,33,48,66,73,87,128,165,186,194],"ever-growing":[13],"number":[14],"sequencing":[16],"projects.":[17],"In":[18],"order":[19],"to":[20,44,52,77,156],"address":[21],"this":[22,121],"challenge,":[23],"we":[24,69,83,102],"recently":[25],"developed":[26],"GOblet,":[27],"free":[29],"web":[30,75,135,159,166,191],"service":[31,76,136,167,192],"anonymous":[36],"sequences":[37],"with":[38,91,179],"Gene":[39],"Ontology":[40],"(GO)":[41],"terms.":[42],"However,":[43],"overcome":[45],"limitations":[46],"GO":[49],"terminology,":[50],"and":[51,85,94,98,139,145,193],"aid":[53],"in":[54],"understanding":[55],"not":[56],"only":[57],"single":[58,182],"components":[59],"but":[60],"as":[61,108],"well":[62],"systemic":[63],"interactions":[64],"between":[65],"individual":[67],"components,":[68],"have":[70],"now":[71,104],"extended":[72,84],"GOblet":[74,106,190],"integrate":[78],"also":[79],"pathway":[80],"annotations.":[81],"Furthermore,":[82],"upgraded":[86],"analysis":[89],"pipeline":[90],"improved":[92],"summaries,":[93],"added":[95],"term":[96],"enrichment":[97],"clustering":[99],"algorithms.":[100],"Finally,":[101],"are":[103,197],"making":[105],"available":[107,199],"stand-alone":[110,162,195],"application":[111,196],"high-throughput":[113],"processing":[114,140],"on":[115],"local":[116],"machines.":[117],"advantages":[119],"frequently":[122],"requested":[123],"feature":[124],"is":[125],"that":[126,146],"a)":[127],"user":[129],"can":[130,150,176],"avoid":[131],"restrictions":[132],"our":[134],"uploading":[138],"large":[141],"amounts":[142],"data,":[144],"b)":[147],"confidential":[148],"be":[151,177],"analysed":[152],"without":[153],"insecure":[154],"transfer":[155],"public":[158],"server.":[160],"version":[163],"been":[169],"implemented":[170],"using":[171],"platform":[172],"independent":[173],"Tcl-scripts,":[174],"which":[175],"run":[178],"just":[180],"runtime":[183],"file":[184],"utilizing":[185],"Starkit":[187],"technology.":[188],"freely":[198],"at":[200],"http://goblet.molgen.mpg.de.":[201]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
