{"id":"https://openalex.org/W2106588434","doi":"https://doi.org/10.2390/biecoll-jib-2008-103","title":"An Unusal Distribution of 6-nt Sequences Near The Transcription Start Site","display_name":"An Unusal Distribution of 6-nt Sequences Near The Transcription Start Site","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W2106588434","doi":"https://doi.org/10.2390/biecoll-jib-2008-103","mag":"2106588434","pmid":"https://pubmed.ncbi.nlm.nih.gov/20134067"},"language":"en","primary_location":{"id":"pmid:20134067","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20134067","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2008-103","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041750997","display_name":"Chanchal K. Mitra","orcid":"https://orcid.org/0009-0008-1144-3188"},"institutions":[{"id":"https://openalex.org/I36893310","display_name":"University of Hyderabad","ror":"https://ror.org/04a7rxb17","country_code":"IN","type":"education","lineage":["https://openalex.org/I36893310"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Mitra, Chanchal K.","raw_affiliation_strings":["Department of Biochemistry, University of Hyderabad, Hyderabad 500 046, INDIA. c mitra@yahoo.com"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Hyderabad, Hyderabad 500 046, INDIA. c mitra@yahoo.com","institution_ids":["https://openalex.org/I36893310"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088629765","display_name":"Luciano Milanesi","orcid":"https://orcid.org/0000-0002-1201-3939"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Milanesi, Luciano","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5041750997"],"corresponding_institution_ids":["https://openalex.org/I36893310"],"apc_list":null,"apc_paid":null,"fwci":0.1383,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.55880956,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.628606915473938},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.6244959235191345},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45540958642959595},{"id":"https://openalex.org/keywords/start-codon","display_name":"Start codon","score":0.454764187335968},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4474324882030487},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4275169372558594},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.41469722986221313},{"id":"https://openalex.org/keywords/coding-region","display_name":"Coding region","score":0.41099268198013306},{"id":"https://openalex.org/keywords/nucleotide","display_name":"Nucleotide","score":0.11951491236686707}],"concepts":[{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.628606915473938},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.6244959235191345},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45540958642959595},{"id":"https://openalex.org/C176990463","wikidata":"https://www.wikidata.org/wiki/Q1854186","display_name":"Start codon","level":4,"score":0.454764187335968},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4474324882030487},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4275169372558594},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.41469722986221313},{"id":"https://openalex.org/C91779695","wikidata":"https://www.wikidata.org/wiki/Q3780824","display_name":"Coding region","level":3,"score":0.41099268198013306},{"id":"https://openalex.org/C512185932","wikidata":"https://www.wikidata.org/wiki/Q28745","display_name":"Nucleotide","level":3,"score":0.11951491236686707},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"pmid:20134067","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20134067","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:297","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2008/297/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/index.php?paper_id=103","raw_type":"Journal Article"},{"id":"doi:10.2390/biecoll-jib-2008-103","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2008-103","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2008-103","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2008-103","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W1987976808","https://openalex.org/W1991259976","https://openalex.org/W2104216356","https://openalex.org/W2121116352","https://openalex.org/W2153007310"],"related_works":["https://openalex.org/W2593067435","https://openalex.org/W2146728788","https://openalex.org/W1988625317","https://openalex.org/W564410050","https://openalex.org/W2287064474","https://openalex.org/W2040410152","https://openalex.org/W3183934972","https://openalex.org/W2082549863","https://openalex.org/W2739786585","https://openalex.org/W1811879490","https://openalex.org/W2071611966","https://openalex.org/W2186443471","https://openalex.org/W2091585739","https://openalex.org/W121989010","https://openalex.org/W2588787358","https://openalex.org/W1749321702","https://openalex.org/W2003796236","https://openalex.org/W3104636521","https://openalex.org/W1983106607","https://openalex.org/W2152954697"],"abstract_inverted_index":{"A":[0],"new":[1],"look":[2],"at":[3],"the":[4,21,28,32,76,86,89,98],"transcription":[5,14,40,51,65],"start":[6,66],"is":[7],"presented":[8],"in":[9,75],"which":[10],"we":[11],"can":[12,42,54,92],"see":[13],"factors":[15,52],"binding":[16,30],"to":[17,31,57,85],"both":[18],"sides":[19],"of":[20,46,49,61],"TSS":[22,87],"as":[23],"an":[24],"essential":[25],"requirement.":[26],"Naturally":[27],"factor":[29],"downstream":[33],"region":[34],"must":[35],"be":[36,55,93],"removed":[37],"so":[38],"that":[39,82],"process":[41],"continue.":[43],"The":[44,64],"presence":[45],"a":[47,72],"number":[48],"distinct":[50],"also":[53,80],"used":[56],"explain":[58],"selective":[59],"activation":[60],"various":[62],"genes.":[63],"site":[67],"by":[68],"itself":[69],"plays":[70],"only":[71],"minor":[73],"role":[74],"whole":[77],"process.":[78],"We":[79],"suggest":[81],"mutations":[83],"close":[84],"on":[88],"coding":[90],"side":[91],"fatal":[94],"even":[95],"if":[96],"preserves":[97],"codon":[99],"table.":[100]},"counts_by_year":[],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
