{"id":"https://openalex.org/W6944958169","doi":"https://doi.org/10.2390/biecoll-jib-2007-74","title":"Supervised classification of combined copy number and gene expression data","display_name":"Supervised classification of combined copy number and gene expression data","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W6944958169","doi":"https://doi.org/10.2390/biecoll-jib-2007-74"},"language":"en","primary_location":{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:255","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2007/255/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/index.php?paper_id=74","raw_type":"Journal Article"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2007-74","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Riccadonna, S.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Riccadonna, S.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Jurman, G.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jurman, G.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Merler, S.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Merler, S.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Paoli, S.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Paoli, S.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Quattrone, A.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Quattrone, A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Furlanello, C.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Furlanello, C.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.4353682,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9506999850273132,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9506999850273132,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11677","display_name":"Congenital heart defects research","score":0.0071000000461936,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.004000000189989805,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.46230000257492065},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.3797999918460846},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3409000039100647},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.329800009727478},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.27300000190734863},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.26589998602867126}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5026999711990356},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47209998965263367},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.46230000257492065},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40959998965263367},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.3797999918460846},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36070001125335693},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3409000039100647},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.329800009727478},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2858000099658966},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.27300000190734863},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.26589998602867126},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2623000144958496},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2590000033378601},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.257999986410141},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.25780001282691956},{"id":"https://openalex.org/C136389625","wikidata":"https://www.wikidata.org/wiki/Q334384","display_name":"Supervised learning","level":3,"score":0.25099998712539673}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:255","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2007/255/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/index.php?paper_id=74","raw_type":"Journal Article"},{"id":"pmh:oai:iris.unitn.it:11572/28439","is_oa":false,"landing_page_url":"http://hdl.handle.net/11572/28439","pdf_url":null,"source":{"id":"https://openalex.org/S4306401913","display_name":"Institutional Research Information System (Universit\u00e0 degli Studi di Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.2390/biecoll-jib-2007-74","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2007-74","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2007-74","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2007-74","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"In":[0],"this":[1],"paper":[2],"we":[3],"apply":[4],"a":[5,42,81],"predictive":[6,106],"profiling":[7,71,116],"method":[8],"to":[9,23,101,137],"genome":[10,52],"copy":[11],"number":[12],"aberrations":[13],"(CNA)":[14],"in":[15],"combination":[16,114],"with":[17,72],"gene":[18],"expression":[19],"and":[20,32,63,78,92,99,105,142,144],"clinical":[21],"data":[22],"identify":[24],"molecular":[25],"patterns":[26],"of":[27,51,64,88,115,129],"cancer":[28,83],"pathophysiology.":[29],"Predictive":[30],"models":[31],"optimal":[33],"feature":[34],"lists":[35],"for":[36,85,160],"the":[37,86,102,113,119,123,150],"platforms":[38],"are":[39,76,97],"developed":[40,98],"by":[41,56,69,139,145],"complete":[43],"validation":[44],"SVM-based":[45],"machine":[46],"learning":[47],"system.":[48],"Ranked":[49],"list":[50],"CNA":[53,103,154],"sites":[54],"(assessed":[55,68],"comparative":[57],"genomic":[58,153],"hybridization":[59],"arrays":[60],"-":[61],"aCGH)":[62],"differentially":[65,146],"expressed":[66,147],"genes":[67],"microarray":[70],"Affy":[73],"HG-U133A":[74],"chips)":[75],"computed":[77],"combined":[79],"on":[80],"breast":[82],"dataset":[84],"discrimination":[87],"Luminal/":[89],"ER+":[90],"(Lum/ER+)":[91],"Basal-like/ER-":[93],"classes.":[94],"Different":[95],"encodings":[96],"applied":[100],"data,":[104],"variable":[107],"selection":[108],"is":[109,131],"discussed.":[110],"We":[111],"analyze":[112],"information":[117],"between":[118],"platforms,":[120],"also":[121],"considering":[122],"pathophysiological":[124],"data.":[125],"A":[126],"specific":[127],"subset":[128],"patients":[130],"identified":[132],"that":[133,152],"has":[134],"different":[135],"response":[136],"classification":[138],"chromosomal":[140],"gains":[141],"losses":[143],"genes,":[148],"corroborating":[149],"idea":[151],"can":[155],"represent":[156],"an":[157],"independent":[158],"source":[159],"tumor":[161],"classification.":[162]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}