{"id":"https://openalex.org/W1262712108","doi":"https://doi.org/10.2390/biecoll-jib-2007-73","title":"Mining for Single Nucleotide Polymorphisms in Expressed Sequence Tags","display_name":"Mining for Single Nucleotide Polymorphisms in Expressed Sequence Tags","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W1262712108","doi":"https://doi.org/10.2390/biecoll-jib-2007-73","mag":"1262712108"},"language":"en","primary_location":{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:254","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2007/254/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/index.php?paper_id=73","raw_type":"Journal Article"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2007-73","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030693142","display_name":"Erika Souche","orcid":"https://orcid.org/0000-0001-9184-445X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Souche, E. L.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023388792","display_name":"Bart Hellemans","orcid":"https://orcid.org/0000-0001-5963-8074"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hellemans, B.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113554088","display_name":"J. K. J. VAN HOUDT","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Van Houdt, J. K. J.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052491753","display_name":"Adelino V. M. Can\u00e1rio","orcid":"https://orcid.org/0000-0002-6244-6468"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Canario, A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062443055","display_name":"Sven Klages","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Klages, S.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048553869","display_name":"Richard Reinhardt","orcid":"https://orcid.org/0000-0001-9376-2132"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Reinhardt, R.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5061873870","display_name":"Filip Volckaert","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Volckaert, F. A. M.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.06512892,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.949400007724762,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.949400007724762,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6959692239761353},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.5785834789276123},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5450497269630432},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5270688533782959},{"id":"https://openalex.org/keywords/nucleic-acid-sequence","display_name":"Nucleic acid sequence","score":0.44612517952919006},{"id":"https://openalex.org/keywords/nucleotide","display_name":"Nucleotide","score":0.4144803285598755},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3546624779701233},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3348120152950287},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32842719554901123},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17064008116722107},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.14172357320785522}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6959692239761353},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.5785834789276123},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5450497269630432},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5270688533782959},{"id":"https://openalex.org/C84148353","wikidata":"https://www.wikidata.org/wiki/Q863908","display_name":"Nucleic acid sequence","level":3,"score":0.44612517952919006},{"id":"https://openalex.org/C512185932","wikidata":"https://www.wikidata.org/wiki/Q28745","display_name":"Nucleotide","level":3,"score":0.4144803285598755},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3546624779701233},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3348120152950287},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32842719554901123},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17064008116722107},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.14172357320785522}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:254","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2007/254/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/index.php?paper_id=73","raw_type":"Journal Article"},{"id":"doi:10.2390/biecoll-jib-2007-73","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2007-73","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2007-73","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2007-73","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1494448421","https://openalex.org/W2110216288","https://openalex.org/W2168913138","https://openalex.org/W2123097295","https://openalex.org/W1516493872","https://openalex.org/W1017115624","https://openalex.org/W2035207030","https://openalex.org/W3726358","https://openalex.org/W2145044811","https://openalex.org/W2119855758","https://openalex.org/W2061895963","https://openalex.org/W2053445167","https://openalex.org/W1989192948","https://openalex.org/W2373670798","https://openalex.org/W2597355150","https://openalex.org/W1991968395","https://openalex.org/W2583306069","https://openalex.org/W1007247472","https://openalex.org/W2026330583","https://openalex.org/W2084893171"],"abstract_inverted_index":{"As":[0],"a":[1,12,37,47,63,89,103,112,117,211],"multitude":[2],"of":[3,27,32,42,72,100,105,160,182,200,213,246],"sequence":[4,44],"data":[5],"are":[6,85],"published,":[7],"discovering":[8],"polymorphisms":[9],"bioinformatically":[10],"becomes":[11],"valid":[13],"option.":[14],"In":[15],"silico":[16,93],"Single":[17],"Nucleotide":[18],"Polymorphism":[19],"(SNP)":[20],"detection":[21,99],"is":[22,35,49,53,107,166],"based":[23],"on":[24],"the":[25,51,57,73,98,121,143,167,177,201,244],"analysis":[26],"multiple":[28],"alignments.":[29],"Each":[30],"column":[31],"an":[33],"alignment":[34],"considered":[36,116],"slice":[38,52],"containing":[39],"one":[40],"base":[41],"every":[43],"aligned.":[45],"If":[46],"mismatch":[48,58,113],"detected,":[50],"further":[54],"analysed":[55],"and":[56,81,136,147,156,164,172,179,197,243],"may":[59],"be":[60,115,221,236],"reported":[61],"as":[62],"candidate":[64,118,127],"SNP.":[65,119],"About":[66],"30,000":[67],"Expressed":[68],"Sequence":[69],"Tags":[70],"(ESTs)":[71],"fish":[74],"European":[75],"sea":[76],"bass":[77],"have":[78],"been":[79],"sequenced":[80,222],"processed.":[82],"Since":[83],"ESTs":[84],"redundant,":[86],"they":[87],"provide":[88],"resource":[90],"for":[91,111,239],"in":[92,109,142,158,241,248],"SNP":[94,226],"discovery.":[95],"To":[96],"prevent":[97],"sequencing":[101],"errors,":[102],"redundancy":[104],"two":[106],"chosen":[108,218],"order":[110],"to":[114,125,191,210,223,230],"Among":[120],"various":[122],"tools":[123,189,228],"available":[124],"detect":[126],"SNPs,":[128],"three":[129],"software":[130],"packages":[131],"were":[132,140,207],"tested:":[133],"SNPServer,":[134],"PolyBayes":[135,155],"PolyFreq.":[137],"Candidate":[138],"SNPs":[139],"validated":[141],"laboratory":[144],"by":[145,187],"cloning":[146],"sequencing.":[148],"From":[149],"preliminary":[150],"results":[151],"PolyFreq":[152,171],"outperforms":[153],"both":[154,193],"SNPServer":[157,165,173],"terms":[159],"positive":[161,194],"predictive":[162,195],"value":[163,196],"most":[168],"sensitive":[169],"tool.":[170],"non-default":[174],"identify":[175],"respectively":[176],"fewest":[178],"highest":[180],"number":[181],"candidates.":[183],"Considering":[184],"candidates":[185],"detected":[186],"several":[188],"seems":[190],"enhance":[192],"sensitivity.":[198],"Out":[199],"69":[202],"loci":[203],"sequenced,":[204],"only":[205],"four":[206],"monomorphic,":[208],"leading":[209],"total":[212],"91.3%":[214],"polymorphic":[215,232],"loci.":[216],"Randomly":[217],"contigs":[219],"will":[220,235],"know":[224],"whether":[225],"discovery":[227],"tend":[229],"predict":[231],"fragments.":[233],"Polymorphisms":[234],"mapped,":[237],"used":[238],"selection":[240],"aquaculture":[242],"study":[245],"adaptation":[247],"natural":[249],"populations.":[250]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-14T07:06:38.338062","created_date":"2025-10-10T00:00:00"}