{"id":"https://openalex.org/W2151416399","doi":"https://doi.org/10.2390/biecoll-jib-2007-69","title":"A Methodology for Comparative Functional Genomics","display_name":"A Methodology for Comparative Functional Genomics","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W2151416399","doi":"https://doi.org/10.2390/biecoll-jib-2007-69","mag":"2151416399"},"language":"en","primary_location":{"id":"pmh:oai:CiteSeerX.psu:10.1.1.125.7831","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.125.7831","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/articles/pdf/jib-69.pdf","raw_type":"text"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2007-69","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015002740","display_name":"Intikhab \u00c1lam","orcid":"https://orcid.org/0000-0001-5306-847X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Alam, Intikhab","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061427104","display_name":"Mike Cornell","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cornell, Mike","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023159762","display_name":"Darren M. Soanes","orcid":"https://orcid.org/0000-0001-5025-295X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Soanes, Darren M.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016443832","display_name":"Cornelia Hedeler","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hedeler, Cornelia","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012121150","display_name":"Han Min Wong","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wong, Han Min","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023995814","display_name":"Magnus Rattray","orcid":"https://orcid.org/0000-0001-8196-5565"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rattray, Magnus","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014554620","display_name":"Simon J. Hubbard","orcid":"https://orcid.org/0000-0002-8601-9524"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hubbard, Simon J.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059099569","display_name":"Nicholas J. Talbot","orcid":"https://orcid.org/0000-0001-6434-7757"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Talbot, Nicholas J.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075883279","display_name":"Stephen G. Oliver","orcid":"https://orcid.org/0000-0003-3410-6439"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Oliver, Stephen G.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5066619159","display_name":"Norman W. Paton","orcid":"https://orcid.org/0000-0003-2008-6617"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Paton, Norman W.","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5015002740"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4347,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.76536225,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10451","display_name":"Mycorrhizal Fungi and Plant Interactions","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10451","display_name":"Mycorrhizal Fungi and Plant Interactions","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12668","display_name":"Yeasts and Rust Fungi Studies","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.7467771768569946},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.607647716999054},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5832042694091797},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5377210974693298},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48775798082351685},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4534360468387604},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4005309045314789},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3433608412742615},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1264488399028778},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08689773082733154},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.07208359241485596}],"concepts":[{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.7467771768569946},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.607647716999054},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5832042694091797},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5377210974693298},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48775798082351685},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4534360468387604},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4005309045314789},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3433608412742615},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1264488399028778},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08689773082733154},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.07208359241485596}],"mesh":[],"locations_count":4,"locations":[{"id":"pmh:oai:CiteSeerX.psu:10.1.1.125.7831","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.125.7831","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/articles/pdf/jib-69.pdf","raw_type":"text"},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:250","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2007/250/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/index.php?paper_id=69","raw_type":"Journal Article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/51af54c8-46c4-4ab4-bdca-5d3312ddddbb","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/51af54c8-46c4-4ab4-bdca-5d3312ddddbb","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Alam, I, Cornell, M, Soanes, D M, Hedeler, C, Wong, H M, Rattray, M, Hubbard, S J, Talbot, N J, Oliver, S G & Paton, N W 2007, 'A Methodology for Comparative Functional Genomics', J. Integrative Bioinformatics, vol. 4, no. 3. https://doi.org/10.2390/biecoll-jib-2007-69","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.2390/biecoll-jib-2007-69","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2007-69","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2007-69","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2007-69","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"score":0.5899999737739563,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1558570329","https://openalex.org/W1982481323","https://openalex.org/W1990203101","https://openalex.org/W2008856488","https://openalex.org/W2010091762","https://openalex.org/W2010597490","https://openalex.org/W2025729362","https://openalex.org/W2054624670","https://openalex.org/W2055043387","https://openalex.org/W2056568233","https://openalex.org/W2103546861","https://openalex.org/W2112711937","https://openalex.org/W2117280851","https://openalex.org/W2122451246","https://openalex.org/W2123265534","https://openalex.org/W2124166542","https://openalex.org/W2124971067","https://openalex.org/W2133787379","https://openalex.org/W2135385301","https://openalex.org/W2136280642","https://openalex.org/W2137441463","https://openalex.org/W2137452575","https://openalex.org/W2169267759","https://openalex.org/W2610682727"],"related_works":["https://openalex.org/W2079499853","https://openalex.org/W2161018660","https://openalex.org/W2147016248","https://openalex.org/W3202487456","https://openalex.org/W2049046860","https://openalex.org/W2397835351","https://openalex.org/W3020283","https://openalex.org/W564941281","https://openalex.org/W1983575462","https://openalex.org/W2328832851","https://openalex.org/W2572956483","https://openalex.org/W972077108","https://openalex.org/W2899354740","https://openalex.org/W2166458088","https://openalex.org/W2137452575","https://openalex.org/W1824262692","https://openalex.org/W2110188698","https://openalex.org/W2121204427","https://openalex.org/W2927978131","https://openalex.org/W2908850246"],"abstract_inverted_index":{"The":[0,74],"continuing":[1],"and":[2,96,111],"rapid":[3],"increase":[4],"in":[5,83,104],"the":[6,30,65,78,109,125],"number":[7],"of":[8,58,77,108],"fully":[9],"sequenced":[10,72],"genomes":[11],"is":[12,80],"creating":[13],"new":[14],"opportunities":[15],"for":[16,29,37,52],"comparative":[17,38,53,85,115],"studies.":[18],"However,":[19],"although":[20],"many":[21],"genomic":[22,44],"databases":[23],"store":[24],"data":[25,45,127],"from":[26,71],"multiple":[27],"organisms,":[28],"most":[31],"part":[32],"they":[33],"provide":[34,48],"limited":[35],"support":[36,51],"genomics.":[39],"We":[40],"argue":[41],"that":[42,67],"refocusing":[43],"management":[46],"to":[47],"more":[49],"direct":[50],"studies":[54],"enables":[55],"systematic":[56,106],"identification":[57],"important":[59],"relationships":[60],"between":[61],"species,":[62],"thereby":[63],"increasing":[64],"value":[66],"can":[68],"be":[69],"obtained":[70],"genomes.":[73],"principal":[75],"result":[76],"paper":[79],"a":[81,90,105],"methodology,":[82],"which":[84],"analyses":[86,116],"are":[87],"constructed":[88],"over":[89,124],"foundation":[91],"based":[92],"on":[93],"sequence":[94],"clusters":[95],"evolutionary":[97],"relationships.":[98],"This":[99],"methodology":[100],"has":[101],"been":[102,118],"applied":[103],"study":[107],"fungi,":[110],"we":[112],"describe":[113],"how":[114],"have":[117],"implemented":[119],"as":[120],"an":[121],"analysis":[122],"library":[123],"e-Fungi":[126],"warehouse.":[128],"1":[129]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
