{"id":"https://openalex.org/W2176989583","doi":"https://doi.org/10.2390/biecoll-jib-2007-63","title":"VINEdb: a data warehouse for integration and interactive exploration of life science data","display_name":"VINEdb: a data warehouse for integration and interactive exploration of life science data","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W2176989583","doi":"https://doi.org/10.2390/biecoll-jib-2007-63","mag":"2176989583"},"language":"en","primary_location":{"id":"pmh:oai:CiteSeerX.psu:10.1.1.89.510","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.89.510","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/articles/pdf/jib-63.pdf","raw_type":"text"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2007-63","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017809913","display_name":"Sridhar Hariharaputran","orcid":"https://orcid.org/0000-0002-9979-3244"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hariharaputran, Sridhar","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078263041","display_name":"Thoralf T\u00f6pel","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"T\u00f6pel, Thoralf","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052745761","display_name":"Bj\u00f6rn Brockschmidt","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Brockschmidt, Bj\u00f6rn","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5001882549","display_name":"Ralf Hofest\u00e4dt","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hofest\u00e4dt, Ralf","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.14622441,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"4","issue":null,"first_page":"74","last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.6606243252754211},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6475759744644165},{"id":"https://openalex.org/keywords/data-warehouse","display_name":"Data warehouse","score":0.5766781568527222},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5161291360855103},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.479400634765625},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.46757203340530396},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.427510142326355},{"id":"https://openalex.org/keywords/transparency","display_name":"Transparency (behavior)","score":0.424007385969162},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3170483112335205},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.30164164304733276},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.15936848521232605}],"concepts":[{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.6606243252754211},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6475759744644165},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.5766781568527222},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5161291360855103},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.479400634765625},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.46757203340530396},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.427510142326355},{"id":"https://openalex.org/C2780233690","wikidata":"https://www.wikidata.org/wiki/Q535347","display_name":"Transparency (behavior)","level":2,"score":0.424007385969162},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3170483112335205},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.30164164304733276},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.15936848521232605},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"pmh:oai:CiteSeerX.psu:10.1.1.89.510","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.89.510","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/articles/pdf/jib-63.pdf","raw_type":"text"},{"id":"pmh:oai:biecoll.ub.uni-bielefeld.de:244","is_oa":false,"landing_page_url":"http://biecoll.ub.uni-bielefeld.de/volltexte/2007/244/","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://journal.imbio.de/index.php?paper_id=63","raw_type":"Journal Article"},{"id":"pmh:oai:pub.librecat.org:2408678","is_oa":false,"landing_page_url":"https://pub.uni-bielefeld.de/record/2408678","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hariharaputran S, T\u00f6pel T, Brockschmidt B, Hofest\u00e4dt R. VINEdb: a data warehouse for integration and interactive exploration of life science data. &lt;em&gt;Integrative Bioinformatics Yearbook 2007&lt;/em&gt;. 2008;4:63-74.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pub.librecat.org:2409274","is_oa":false,"landing_page_url":"https://pub.uni-bielefeld.de/record/2409274","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hariharaputran S, T\u00f6pel T, Brockschmidt B, Hofest\u00e4dt R. VINEdb: a data warehouse for integration and interactive exploration of life science data. In:  &lt;em&gt;Proceedings of the 4th Integrative Bioinformatics Workshop (IB 07)&lt;/em&gt;. 2007.","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"doi:10.2390/biecoll-jib-2007-63","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2007-63","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"mag:2176989583","is_oa":false,"landing_page_url":"https://pub.uni-bielefeld.de/publication/2408678","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2007-63","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2007-63","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5400000214576721,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1678180139","https://openalex.org/W1835571316","https://openalex.org/W1983594585","https://openalex.org/W2001914359","https://openalex.org/W2035923305","https://openalex.org/W2114228709","https://openalex.org/W2121520198","https://openalex.org/W2123891919","https://openalex.org/W2125816119","https://openalex.org/W2155991374","https://openalex.org/W2498988492"],"related_works":["https://openalex.org/W2132349196","https://openalex.org/W1555557413","https://openalex.org/W2121905803","https://openalex.org/W2619108075","https://openalex.org/W2143387613","https://openalex.org/W2105508573","https://openalex.org/W2100209768","https://openalex.org/W1974436271","https://openalex.org/W103181347","https://openalex.org/W2090719087","https://openalex.org/W2002107667","https://openalex.org/W3116802215","https://openalex.org/W2924595301","https://openalex.org/W2134298747","https://openalex.org/W2161441225","https://openalex.org/W2768677531","https://openalex.org/W2117697057","https://openalex.org/W2120679339","https://openalex.org/W2968437918","https://openalex.org/W1967162148"],"abstract_inverted_index":{"Control":[0],"of":[1,16,45,136,147,180,200],"cell":[2,7,22,39],"proliferation,":[3],"differentiation,":[4],"activation":[5],"and":[6,14,33,41,62,71,76,80,94,102,120,140,149,159,189,198],"removal":[8],"is":[9,24,34,90,151,169,204],"crucial":[10],"for":[11,57],"the":[12,137,141,161,164,167,181],"development":[13],"existence":[15],"multi-cellular":[17],"organisms.":[18],"Apoptosis,":[19],"or":[20],"programmed":[21],"death,":[23],"a":[25,106,113,154,172,192],"major":[26],"control":[27,158],"mechanism":[28],"by":[29,78,153,171],"which":[30],"cells":[31],"die":[32],"also":[35],"important":[36],"in":[37,69,84,105],"controlling":[38],"number":[40],"proliferation":[42],"as":[43,82,191],"part":[44],"normal":[46],"development.":[47],"Molecular":[48],"networks":[49],"that":[50],"regulate":[51],"these":[52,96],"processes":[53,73],"are":[54,74],"critical":[55],"targets":[56],"drug":[58],"development,":[59],"gene":[60],"therapy,":[61],"metabolic":[63],"engineering.":[64],"The":[65,87],"molecular":[66],"interactions":[67],"involved":[68],"this":[70],"other":[72],"analyzed":[75],"annotated":[77],"experts":[79],"stored":[81],"data":[83,97,114,130,162],"different":[85,100],"databases.":[86],"key":[88],"task":[89],"to":[91,117,121,157,175,195],"integrate,":[92],"manage":[93],"visualize":[95],"available":[98,205],"from":[99,163],"sources":[101],"present":[103,111],"them":[104],"user-comprehensible":[107],"manner.":[108],"Here":[109],"we":[110],"VINEdb,":[112],"warehouse":[115,131],"developed":[116],"interact":[118],"with":[119],"explore":[122],"integrated":[123,182],"life":[124],"science":[125],"data.":[126,183],"Extendable":[127],"open":[128],"source":[129],"architecture":[132],"enables":[133],"platform-independent":[134],"usability":[135,199],"web":[138],"application":[139],"underlying":[142],"infrastructure.":[143],"A":[144],"high":[145],"degree":[146],"transparency":[148],"up-to-dateness":[150],"ensured":[152],"monitor":[155],"component":[156,174],"update":[160],"sources.":[165],"Furthermore,":[166],"system":[168],"supported":[170],"visualization":[173],"allow":[176],"interactive":[177],"graphical":[178],"exploration":[179],"We":[184],"will":[185],"use":[186],"apoptotic":[187],"pathway":[188],"caspase-3":[190],"case":[193],"study":[194],"show":[196],"capability":[197],"our":[201],"approach.":[202],"VINEdb":[203],"at":[206],"http://tunicata.techfak.uni-bielefeld.de/VINEdb/.":[207]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
