{"id":"https://openalex.org/W2219095436","doi":"https://doi.org/10.2390/biecoll-jib-2007-61","title":"From MIN model to ordinary differential equations","display_name":"From MIN model to ordinary differential equations","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W2219095436","doi":"https://doi.org/10.2390/biecoll-jib-2007-61","mag":"2219095436"},"language":"en","primary_location":{"id":"pmh:oai:dipot.ulb.ac.be:2013/220929","is_oa":false,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/220929","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of integrative bioinformatics, 4 (3","raw_type":"info:ulb-repo/semantics/openurl/article"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2007-61","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056304882","display_name":"Anastasia Yartseva","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Yartseva, A.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079564039","display_name":"Raymond Devillers","orcid":"https://orcid.org/0000-0002-4339-2708"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Devillers, R.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010761880","display_name":"Hanna Klaudel","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Klaudel, H.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5052082741","display_name":"Fran\u00e7ois K\u00e9p\u00e8s","orcid":"https://orcid.org/0000-0001-5766-4957"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kepes, F.","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5056304882"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1578,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.5771877,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9765999913215637,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9765999913215637,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.949999988079071,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.946399986743927,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ordinary-differential-equation","display_name":"Ordinary differential equation","score":0.7668932676315308},{"id":"https://openalex.org/keywords/ode","display_name":"Ode","score":0.7310259342193604},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7066105604171753},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6856837272644043},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.580488383769989},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5582667589187622},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5093256235122681},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5089859962463379},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.42955508828163147},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.38935402035713196},{"id":"https://openalex.org/keywords/differential-equation","display_name":"Differential equation","score":0.3728750944137573},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3440307378768921},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3283151090145111},{"id":"https://openalex.org/keywords/applied-mathematics","display_name":"Applied mathematics","score":0.23578494787216187},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.22828751802444458},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.21857213973999023},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21297422051429749},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10258808732032776}],"concepts":[{"id":"https://openalex.org/C51544822","wikidata":"https://www.wikidata.org/wiki/Q465274","display_name":"Ordinary differential equation","level":3,"score":0.7668932676315308},{"id":"https://openalex.org/C34862557","wikidata":"https://www.wikidata.org/wiki/Q178985","display_name":"Ode","level":2,"score":0.7310259342193604},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7066105604171753},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6856837272644043},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.580488383769989},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5582667589187622},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5093256235122681},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5089859962463379},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.42955508828163147},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.38935402035713196},{"id":"https://openalex.org/C78045399","wikidata":"https://www.wikidata.org/wiki/Q11214","display_name":"Differential equation","level":2,"score":0.3728750944137573},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3440307378768921},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3283151090145111},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.23578494787216187},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.22828751802444458},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.21857213973999023},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21297422051429749},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10258808732032776},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:dipot.ulb.ac.be:2013/220929","is_oa":false,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/220929","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of integrative bioinformatics, 4 (3","raw_type":"info:ulb-repo/semantics/openurl/article"},{"id":"doi:10.2390/biecoll-jib-2007-61","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2007-61","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2007-61","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2007-61","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2130147385","https://openalex.org/W1984635326","https://openalex.org/W3104322535","https://openalex.org/W2783096668","https://openalex.org/W2768517143","https://openalex.org/W1970439399","https://openalex.org/W2748963267","https://openalex.org/W2130575108","https://openalex.org/W2134897855","https://openalex.org/W2612510941","https://openalex.org/W2539211391","https://openalex.org/W370055418","https://openalex.org/W2489530287","https://openalex.org/W2489614664","https://openalex.org/W3100804964","https://openalex.org/W1906976581","https://openalex.org/W2007456257","https://openalex.org/W2016648098","https://openalex.org/W2167095277","https://openalex.org/W2029345008"],"abstract_inverted_index":{"Biological":[0],"interaction":[1],"networks":[2],"can":[3],"be":[4],"modeled":[5],"using":[6],"the":[7,20,75,78,88],"Modular":[8],"Interaction":[9],"Network":[10],"(MIN)":[11],"formalism,":[12],"which":[13],"provides":[14],"an":[15],"intermediary":[16],"modeling":[17],"level":[18],"between":[19],"biological":[21,36,62],"and":[22,32],"mathematical":[23],"ones.":[24],"MIN":[25,58],"focuses":[26],"on":[27,84],"a":[28,40,51,57,61,85],"simple":[29],"but":[30],"structured":[31],"versatile":[33],"representation":[34,66],"of":[35,60,77],"knowledge,":[37],"without":[38],"targeting":[39],"particular":[41],"analysis":[42],"or":[43],"simulation":[44],"technique.":[45],"In":[46],"this":[47],"paper,":[48],"we":[49],"propose":[50],"translation":[52,81],"procedure":[53],"which,":[54],"starting":[55],"from":[56],"specification":[59],"system,":[63],"generates":[64],"its":[65],"in":[67],"ordinary":[68],"differential":[69],"equations":[70],"(ODEs)":[71],"allowing":[72],"to":[73],"study":[74],"dynamics":[76],"system.":[79],"The":[80],"is":[82],"illustrated":[83],"classical":[86],"benchmark:":[87],"lambda":[89],"phage":[90],"genetic":[91],"switch.":[92]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2016-06-24T00:00:00"}