{"id":"https://openalex.org/W70121273","doi":"https://doi.org/10.2390/biecoll-jib-2006-26","title":"BASIS: an internet resource for network modelling","display_name":"BASIS: an internet resource for network modelling","publication_year":2007,"publication_date":"2007-01-01","ids":{"openalex":"https://openalex.org/W70121273","doi":"https://doi.org/10.2390/biecoll-jib-2006-26","mag":"70121273"},"language":"en","primary_location":{"id":"doi:10.2390/biecoll-jib-2006-26","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2006-26","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2390/biecoll-jib-2006-26","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003647740","display_name":"Colin S. Gillespie","orcid":"https://orcid.org/0000-0003-1787-0275"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Gillespie, Colin S.","raw_affiliation_strings":["1School of Mathematics & Statistics, Newcastle University, UK United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"1School of Mathematics & Statistics, Newcastle University, UK United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011926448","display_name":"Darren J. Wilkinson","orcid":"https://orcid.org/0000-0003-0736-802X"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Wilkinson, Darren J.","raw_affiliation_strings":["1School of Mathematics & Statistics, Newcastle University, UK United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"1School of Mathematics & Statistics, Newcastle University, UK United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029338507","display_name":"Daryl P. Shanley","orcid":"https://orcid.org/0000-0003-3096-6386"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]},{"id":"https://openalex.org/I4210150491","display_name":"Newcastle Hospitals - Campus for Ageing and Vitality","ror":"https://ror.org/051qy7v07","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2801663869","https://openalex.org/I4210150491"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Shanley, Daryl P.","raw_affiliation_strings":["3Institute for Ageing and Health, and SCMS \u2013 Gerontology, Newcastle University, UK United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"3Institute for Ageing and Health, and SCMS \u2013 Gerontology, Newcastle University, UK United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I4210150491","https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001280057","display_name":"Carole J. Proctor","orcid":"https://orcid.org/0000-0002-1366-1399"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]},{"id":"https://openalex.org/I4210150491","display_name":"Newcastle Hospitals - Campus for Ageing and Vitality","ror":"https://ror.org/051qy7v07","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2801663869","https://openalex.org/I4210150491"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Proctor, Carole J.","raw_affiliation_strings":["3Institute for Ageing and Health, and SCMS \u2013 Gerontology, Newcastle University, UK United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"3Institute for Ageing and Health, and SCMS \u2013 Gerontology, Newcastle University, UK United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I4210150491","https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109566704","display_name":"Richard J. Boys","orcid":null},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Boys, Richard J.","raw_affiliation_strings":["1School of Mathematics & Statistics, Newcastle University, UK United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"1School of Mathematics & Statistics, Newcastle University, UK United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037656057","display_name":"Thomas B. L. Kirkwood","orcid":"https://orcid.org/0000-0002-6675-8944"},"institutions":[{"id":"https://openalex.org/I4210150491","display_name":"Newcastle Hospitals - Campus for Ageing and Vitality","ror":"https://ror.org/051qy7v07","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2801663869","https://openalex.org/I4210150491"]},{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kirkwood, Thomas B. L.","raw_affiliation_strings":["3Institute for Ageing and Health, and SCMS \u2013 Gerontology, Newcastle University, UK United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"3Institute for Ageing and Health, and SCMS \u2013 Gerontology, Newcastle University, UK United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I4210150491","https://openalex.org/I84884186"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5003647740"],"corresponding_institution_ids":["https://openalex.org/I84884186"],"apc_list":null,"apc_paid":null,"fwci":0.1309,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.49696891,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9674000144004822,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8068962097167969},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7065409421920776},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.6070518493652344},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5495296716690063},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.46804332733154297},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4268355071544647},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4207083582878113},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.34730836749076843}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8068962097167969},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7065409421920776},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.6070518493652344},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5495296716690063},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.46804332733154297},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4268355071544647},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4207083582878113},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.34730836749076843}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.2390/biecoll-jib-2006-26","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2006-26","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2390/biecoll-jib-2006-26","is_oa":true,"landing_page_url":"https://doi.org/10.2390/biecoll-jib-2006-26","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4300000071525574}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1499965417","https://openalex.org/W1549518189","https://openalex.org/W1784252528","https://openalex.org/W1981219082","https://openalex.org/W2007269038","https://openalex.org/W2014118496","https://openalex.org/W2019467713","https://openalex.org/W2022333738","https://openalex.org/W2036862428","https://openalex.org/W2041793728","https://openalex.org/W2065219357","https://openalex.org/W2075415421","https://openalex.org/W2107062718","https://openalex.org/W2111420033","https://openalex.org/W2117792713","https://openalex.org/W2125937596","https://openalex.org/W2140000393","https://openalex.org/W2150511069","https://openalex.org/W2150750144","https://openalex.org/W2150908245","https://openalex.org/W2155418451","https://openalex.org/W2160751597","https://openalex.org/W2170032647","https://openalex.org/W2170543954","https://openalex.org/W2274321329"],"related_works":["https://openalex.org/W1922141201","https://openalex.org/W2293946261","https://openalex.org/W1595614132","https://openalex.org/W149998097","https://openalex.org/W2357072580","https://openalex.org/W1500716378","https://openalex.org/W2600586607","https://openalex.org/W2078750586","https://openalex.org/W2365116875","https://openalex.org/W1518914660","https://openalex.org/W2147461339","https://openalex.org/W2074460589","https://openalex.org/W2950223910","https://openalex.org/W595494729","https://openalex.org/W1041657515","https://openalex.org/W2589703474","https://openalex.org/W3161492107","https://openalex.org/W1428125149","https://openalex.org/W581361620","https://openalex.org/W2794575474"],"abstract_inverted_index":{"There":[0],"is":[1,63],"a":[2,26,28],"growing":[3],"realisation":[4],"that":[5],"complex":[6],"biological":[7],"processes":[8],"cannot":[9],"be":[10],"understood":[11],"through":[12,65],"the":[13],"application":[14],"of":[15,37],"ever":[16],"more":[17],"reductionist":[18],"experimental":[19],"programs":[20],"alone.":[21],"Recognising":[22],"this,":[23],"we":[24],"have":[25],"constructed":[27],"flexible":[29],"web-service":[30],"based":[31],"modelling":[32],"system":[33,62,78],"called":[34],"BASIS":[35],"(Biology":[36],"Ageing":[38],"e-Science":[39],"Integration":[40],"and":[41,47,57],"Simulation),":[42],"which":[43],"facilitates":[44],"model":[45],"construction":[46],"development.":[48],"In":[49],"particular":[50],"it":[51],"allows":[52],"users":[53],"to":[54],"store,":[55],"share":[56],"simulate":[58],"their":[59],"models.":[60],"The":[61],"accessed":[64],"web-services":[66],"using":[67],"any":[68,76],"language":[69],"(e.g.":[70,79],"Python":[71],"or":[72,74,81],"Java)":[73],"under":[75],"operating":[77],"Linux":[80],"Windows).":[82]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
