{"id":"https://openalex.org/W2963181134","doi":"https://doi.org/10.23638/dmtcs-22-1-22","title":"The agreement distance of unrooted phylogenetic networks","display_name":"The agreement distance of unrooted phylogenetic networks","publication_year":2020,"publication_date":"2020-07-09","ids":{"openalex":"https://openalex.org/W2963181134","doi":"https://doi.org/10.23638/dmtcs-22-1-22","mag":"2963181134"},"language":"en","primary_location":{"id":"doi:10.23638/dmtcs-22-1-22","is_oa":true,"landing_page_url":"https://doi.org/10.23638/dmtcs-22-1-22","pdf_url":"https://dmtcs.episciences.org/6567/pdf","source":{"id":"https://openalex.org/S200334879","display_name":"Discrete Mathematics & Theoretical Computer Science","issn_l":"1365-8050","issn":["1365-8050","1462-7264"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4328141799","host_organization_name":"French association","host_organization_lineage":["https://openalex.org/P4328141799"],"host_organization_lineage_names":["French association"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Discrete Mathematics &amp; Theoretical Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://dmtcs.episciences.org/6567/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077181010","display_name":"Jonathan Klawitter","orcid":"https://orcid.org/0000-0001-8917-5269"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jonathan Klawitter","raw_affiliation_strings":["University of Wrzburg , Germany","University of W\u00fcrzburg, Germany"],"raw_orcid":"https://orcid.org/0000-0001-8917-5269","affiliations":[{"raw_affiliation_string":"University of Wrzburg , Germany","institution_ids":["https://openalex.org/I25974101"]},{"raw_affiliation_string":"University of W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5077181010"],"corresponding_institution_ids":["https://openalex.org/I25974101"],"apc_list":null,"apc_paid":null,"fwci":0.0746,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.375551,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"vol. 22 no. 1","issue":"Graph Theory","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.968500018119812,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9556999802589417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.8410065174102783},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.513461172580719},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.4898190200328827},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3382500410079956},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10683414340019226}],"concepts":[{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.8410065174102783},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.513461172580719},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.4898190200328827},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3382500410079956},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10683414340019226},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.23638/dmtcs-22-1-22","is_oa":true,"landing_page_url":"https://doi.org/10.23638/dmtcs-22-1-22","pdf_url":"https://dmtcs.episciences.org/6567/pdf","source":{"id":"https://openalex.org/S200334879","display_name":"Discrete Mathematics & Theoretical Computer Science","issn_l":"1365-8050","issn":["1365-8050","1462-7264"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4328141799","host_organization_name":"French association","host_organization_lineage":["https://openalex.org/P4328141799"],"host_organization_lineage_names":["French association"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Discrete Mathematics &amp; Theoretical Computer Science","raw_type":"journal-article"},{"id":"pmh:oai:arXiv.org:1908.08183","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1908.08183","pdf_url":"https://arxiv.org/pdf/1908.08183","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:doaj.org/article:e6a51ee2eccf4c7185d2a008b6642996","is_oa":true,"landing_page_url":"https://doaj.org/article/e6a51ee2eccf4c7185d2a008b6642996","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Discrete Mathematics & Theoretical Computer Science, Vol vol. 22 no. 1, Iss Graph Theory (2020)","raw_type":"article"},{"id":"mag:2963181134","is_oa":true,"landing_page_url":"https://dmtcs.episciences.org/6567/pdf","pdf_url":null,"source":{"id":"https://openalex.org/S200334879","display_name":"Discrete Mathematics & Theoretical Computer Science","issn_l":"1365-8050","issn":["1365-8050","1462-7264"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4328141799","host_organization_name":"French association","host_organization_lineage":["https://openalex.org/P4328141799"],"host_organization_lineage_names":["French association"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Discrete Mathematics & Theoretical Computer Science","raw_type":null}],"best_oa_location":{"id":"doi:10.23638/dmtcs-22-1-22","is_oa":true,"landing_page_url":"https://doi.org/10.23638/dmtcs-22-1-22","pdf_url":"https://dmtcs.episciences.org/6567/pdf","source":{"id":"https://openalex.org/S200334879","display_name":"Discrete Mathematics & Theoretical Computer Science","issn_l":"1365-8050","issn":["1365-8050","1462-7264"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4328141799","host_organization_name":"French association","host_organization_lineage":["https://openalex.org/P4328141799"],"host_organization_lineage_names":["French association"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Discrete Mathematics &amp; Theoretical Computer Science","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.699999988079071}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335369","display_name":"Marsden Fund","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2963181134.pdf","grobid_xml":"https://content.openalex.org/works/W2963181134.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1495632090","https://openalex.org/W1982172875","https://openalex.org/W1982901388","https://openalex.org/W2026062398","https://openalex.org/W2042774332","https://openalex.org/W2042877799","https://openalex.org/W2044789562","https://openalex.org/W2052824789","https://openalex.org/W2062214685","https://openalex.org/W2080787406","https://openalex.org/W2111211467","https://openalex.org/W2113087313","https://openalex.org/W2115590956","https://openalex.org/W2117665706","https://openalex.org/W2121505045","https://openalex.org/W2126358107","https://openalex.org/W2145171033","https://openalex.org/W2146058063","https://openalex.org/W2163838873","https://openalex.org/W2407777965","https://openalex.org/W2460352850","https://openalex.org/W2484986946","https://openalex.org/W2530251111","https://openalex.org/W2587197905","https://openalex.org/W2596837656","https://openalex.org/W2605394804","https://openalex.org/W2615835262","https://openalex.org/W2741899203","https://openalex.org/W2951755929","https://openalex.org/W2963489689","https://openalex.org/W2963583717","https://openalex.org/W2963852331","https://openalex.org/W2995002582","https://openalex.org/W2999021142","https://openalex.org/W3104863200","https://openalex.org/W4242118851","https://openalex.org/W4242910243","https://openalex.org/W4245608944","https://openalex.org/W4255084898","https://openalex.org/W4394741625","https://openalex.org/W4409139604"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W1979597421","https://openalex.org/W2007980826","https://openalex.org/W2061531152","https://openalex.org/W3002753104","https://openalex.org/W2077600819","https://openalex.org/W2142036596","https://openalex.org/W2072657027","https://openalex.org/W2962838298","https://openalex.org/W2600246793"],"abstract_inverted_index":{"A":[0],"rearrangement":[1,25],"operation":[2],"makes":[3],"a":[4,9,51,75,81,84,96,119],"small":[5],"graph-theoretical":[6],"change":[7],"to":[8,12],"phylogenetic":[10,20,57,66,126],"network":[11],"transform":[13],"it":[14,152],"into":[15],"another":[16],"one.":[17],"For":[18],"unrooted":[19,65],"trees":[21,58,67],"and":[22,30,33,35,41,59,69,93,109],"networks,":[23,148],"popular":[24],"operations":[26,49],"are":[27],"tree":[28],"bisection":[29],"reconnection":[31],"(TBR)":[32],"prune":[34,40],"regraft":[36,42],"(PR)":[37],"(called":[38],"subtree":[39],"(SPR)":[43],"on":[44,53,157],"trees).":[45],"Each":[46],"of":[47,56,87,105,121,146,168],"these":[48],"induces":[50],"metric":[52,134],"the":[54,103,129,133,144,158],"sets":[55],"networks.":[60,127],"The":[61],"TBR-distance":[62,145],"between":[63],"two":[64,147],"$T$":[68,92],"$T'$":[70,94],"can":[71],"be":[72],"characterised":[73],"by":[74,136],"maximum":[76,115,122,137,169],"agreement":[77,116,123,130,138,171],"forest,":[78],"that":[79,89,151],"is,":[80],"forest":[82],"with":[83],"minimum":[85],"number":[86],"components":[88],"covers":[90],"both":[91],"in":[95,166],"certain":[97],"way.":[98],"This":[99],"characterisation":[100],"has":[101],"facilitated":[102],"development":[104],"fixed-parameter":[106],"tractable":[107],"algorithms":[108],"approximation":[110],"algorithms.":[111],"Here,":[112],"we":[113,149],"introduce":[114],"graphs":[117,139],"as":[118],"generalisations":[120],"forests":[124],"for":[125,164],"While":[128],"distance":[131],"--":[132,140],"induced":[135],"does":[141],"not":[142],"characterise":[143],"show":[150],"still":[153],"provides":[154],"constant-factor":[155],"bounds":[156],"TBR-distance.":[159],"We":[160],"find":[161],"similar":[162],"results":[163],"PR":[165],"terms":[167],"endpoint":[170],"graphs.":[172],"Comment:":[173],"23":[174],"pages,":[175],"13":[176],"figures,":[177],"final":[178],"journal":[179],"version":[180]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-08-05T07:39:15.569665","created_date":"2025-10-10T00:00:00"}
