{"id":"https://openalex.org/W3021474118","doi":"https://doi.org/10.2312/vcbm.20191247","title":"Hybrid Visualization of Protein-Lipid and Protein-Protein Interaction","display_name":"Hybrid Visualization of Protein-Lipid and Protein-Protein Interaction","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W3021474118","doi":"https://doi.org/10.2312/vcbm.20191247","mag":"3021474118"},"language":"en","primary_location":{"id":"doi:10.2312/vcbm.20191247","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20191247","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2312/vcbm.20191247","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041196844","display_name":"Naif Khalaf Alharbi","orcid":"https://orcid.org/0000-0002-6049-3383"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Alharbi, Naif","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003476748","display_name":"Michael Krone","orcid":"https://orcid.org/0000-0002-1445-7568"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Krone, Michael","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082706216","display_name":"Matthieu Chavent","orcid":"https://orcid.org/0000-0003-4524-4773"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chavent, Matthieu","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5031570473","display_name":"Robert S. Laramee","orcid":"https://orcid.org/0000-0002-3874-6145"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Laramee, Robert S.","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5041196844"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1705,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.5375802,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7591000199317932,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7591000199317932,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.7542999982833862,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.6484000086784363,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.49751046299934387},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.480851948261261},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.37559106945991516},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.35435888171195984},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.22593122720718384},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19045615196228027}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.49751046299934387},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.480851948261261},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.37559106945991516},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35435888171195984},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.22593122720718384},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19045615196228027}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.2312/vcbm.20191247","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20191247","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2312/vcbm.20191247","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20191247","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2914500685","https://openalex.org/W2246572137","https://openalex.org/W2790437760","https://openalex.org/W1592812829","https://openalex.org/W3010198187","https://openalex.org/W2341731458","https://openalex.org/W2087801084","https://openalex.org/W2400635143","https://openalex.org/W2199318493","https://openalex.org/W2995285649","https://openalex.org/W3082272106","https://openalex.org/W2147068690","https://openalex.org/W2065933707","https://openalex.org/W2076230128","https://openalex.org/W1605183013","https://openalex.org/W2588154620","https://openalex.org/W2162962949","https://openalex.org/W2494594316","https://openalex.org/W2375209783","https://openalex.org/W2980265416"],"abstract_inverted_index":{"In":[0],"the":[1,24,31,40,49,56,60,97,131,148,165],"Molecular":[2],"Dynamics":[3],"(MD)":[4],"visualization":[5],"literature,":[6],"different":[7],"approaches":[8],"are":[9,142],"utilized":[10],"to":[11,38,95,111,124,144],"study":[12,39,167],"protein-lipid":[13],"interactions":[14],"(PLI)":[15],"and":[16,42,53,84,101,128,170,193],"protein-protein":[17],"interaction":[18,28],"(PPI)":[19],"in":[20,30,44,114,134,157,175],"decoupled":[21],"contexts.":[22],"However,":[23],"two":[25],"types":[26],"of":[27,58,69,92,99],"occur":[29],"same":[32],"space-time":[33],"domain.":[34],"It":[35],"is":[36,109,122],"beneficial":[37],"PLI":[41,100,127,169],"PPI":[43,102,129,146,171],"a":[45,65,73,77,81,85,90,104,118,135,158,176],"unified":[46,105,159,177],"context.":[47],"Nevertheless,":[48],"simulation's":[50],"size,":[51],"length,":[52],"complexity":[54],"increase":[55],"challenge":[57],"understanding":[59],"dynamic":[61],"behavior.":[62],"We":[63,88,151,181],"propose":[64],"novel":[66,78],"framework":[67],"consisting":[68],"four":[70],"linked":[71],"views,":[72],"time-dependent":[74],"3D":[75],"view,":[76,80],"hybrid":[79,115],"clustering":[82,192],"timeline,":[83],"details-on-demand":[86],"window.":[87],"introduce":[89],"selection":[91],"visual":[93,138,155,178],"designs":[94,156],"convey":[96],"behavior":[98],"through":[103],"coordinate":[106,160],"system.":[107],"Abstraction":[108],"used":[110,123,143],"present":[112,125],"proteins":[113],"2D":[116],"space,":[117],"projected":[119],"tiled":[120],"space":[121],"both":[126,168],"at":[130,147],"particle":[132],"level":[133],"heat-map":[136],"style":[137],"design":[139],"while":[140],"glyphs":[141],"represent":[145],"molecular":[149],"level.":[150],"couple":[152],"visually":[153],"separable":[154],"space.":[161],"The":[162],"result":[163],"lets":[164],"user":[166],"separately":[172],"or":[173],"together":[174],"analysis":[179],"framework.":[180],"also":[182],"exemplify":[183],"its":[184],"use":[185],"with":[186],"case":[187],"studies":[188],"focusing":[189],"on":[190],"protein":[191],"we":[194],"report":[195],"domain":[196],"expert":[197],"feedback.":[198]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
