{"id":"https://openalex.org/W2293077141","doi":"https://doi.org/10.2312/vcbm.20151207","title":"FoldSynth: Interactive 2D/3D Visualisation Platform for Molecular Strands","display_name":"FoldSynth: Interactive 2D/3D Visualisation Platform for Molecular Strands","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2293077141","doi":"https://doi.org/10.2312/vcbm.20151207","mag":"2293077141"},"language":"en","primary_location":{"id":"pmh:oai:eprints.gold.ac.uk:17592","is_oa":true,"landing_page_url":"https://research.gold.ac.uk/view/goldsmiths/Todd=3AStephen=3A=3A.html>;","pdf_url":"https://research.gold.ac.uk/17592/1/paper1016-FoldSynth-v4-correct.pdf","source":{"id":"https://openalex.org/S4306400496","display_name":"Goldsmiths (University of London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I166337079","host_organization_name":"Queen Mary University of London","host_organization_lineage":["https://openalex.org/I166337079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"public"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://research.gold.ac.uk/17592/1/paper1016-FoldSynth-v4-correct.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047921537","display_name":"Stephen Todd","orcid":null},"institutions":[{"id":"https://openalex.org/I124357947","display_name":"University of London","ror":"https://ror.org/04cw6st05","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Todd, Stephen","raw_affiliation_strings":["Univ. of London, U.K.#TAB#"],"affiliations":[{"raw_affiliation_string":"Univ. of London, U.K.#TAB#","institution_ids":["https://openalex.org/I124357947"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077689573","display_name":"Peter Todd","orcid":null},"institutions":[{"id":"https://openalex.org/I124357947","display_name":"University of London","ror":"https://ror.org/04cw6st05","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Todd, Peter","raw_affiliation_strings":["Univ. of London, U.K.#TAB#"],"affiliations":[{"raw_affiliation_string":"Univ. of London, U.K.#TAB#","institution_ids":["https://openalex.org/I124357947"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037049258","display_name":"Fr\u00e9d\u00e9ric Fol Leymarie","orcid":"https://orcid.org/0000-0002-3221-8966"},"institutions":[{"id":"https://openalex.org/I124357947","display_name":"University of London","ror":"https://ror.org/04cw6st05","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Leymarie, Frederic Fol","raw_affiliation_strings":["Univ. of London, U.K.#TAB#"],"affiliations":[{"raw_affiliation_string":"Univ. of London, U.K.#TAB#","institution_ids":["https://openalex.org/I124357947"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109806428","display_name":"William Latham","orcid":"https://orcid.org/0000-0002-8430-222X"},"institutions":[{"id":"https://openalex.org/I124357947","display_name":"University of London","ror":"https://ror.org/04cw6st05","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Latham, William","raw_affiliation_strings":["Univ. of London, U.K.#TAB#"],"affiliations":[{"raw_affiliation_string":"Univ. of London, U.K.#TAB#","institution_ids":["https://openalex.org/I124357947"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000287650","display_name":"Lawrence A. Kelley","orcid":"https://orcid.org/0000-0002-3210-2656"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kelley, Lawrence A.","raw_affiliation_strings":["[Imperial College, London, U. K.]"],"affiliations":[{"raw_affiliation_string":"[Imperial College, London, U. K.]","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023619547","display_name":"Michael J.E. Sternberg","orcid":"https://orcid.org/0000-0002-1884-5445"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sternberg, Michael","raw_affiliation_strings":["[Imperial College, London, U. K.]"],"affiliations":[{"raw_affiliation_string":"[Imperial College, London, U. K.]","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059358864","display_name":"J. Hugues","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hugues, Jim","raw_affiliation_strings":["Oxford University U.K"],"affiliations":[{"raw_affiliation_string":"Oxford University U.K","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030623879","display_name":"Stephen Taylor","orcid":"https://orcid.org/0000-0002-3559-4334"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Taylor, Stephen","raw_affiliation_strings":["Oxford University U.K"],"affiliations":[{"raw_affiliation_string":"Oxford University U.K","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5047921537"],"corresponding_institution_ids":["https://openalex.org/I124357947"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"41","last_page":"50"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10923","display_name":"Force Microscopy Techniques and Applications","score":0.9818000197410583,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8418279886245728},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7144778370857239},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.5240409970283508},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.5220065712928772},{"id":"https://openalex.org/keywords/raster-graphics","display_name":"Raster graphics","score":0.506943941116333},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4911298453807831},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4456876218318939},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.37309858202934265},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21170267462730408},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09481737017631531}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8418279886245728},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7144778370857239},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.5240409970283508},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.5220065712928772},{"id":"https://openalex.org/C181844469","wikidata":"https://www.wikidata.org/wiki/Q182270","display_name":"Raster graphics","level":2,"score":0.506943941116333},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4911298453807831},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4456876218318939},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.37309858202934265},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21170267462730408},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09481737017631531},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:eprints.gold.ac.uk:17592","is_oa":true,"landing_page_url":"https://research.gold.ac.uk/view/goldsmiths/Todd=3AStephen=3A=3A.html>;","pdf_url":"https://research.gold.ac.uk/17592/1/paper1016-FoldSynth-v4-correct.pdf","source":{"id":"https://openalex.org/S4306400496","display_name":"Goldsmiths (University of London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I166337079","host_organization_name":"Queen Mary University of London","host_organization_lineage":["https://openalex.org/I166337079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"public"},{"id":"doi:10.2312/vcbm.20151207","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20151207","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"},{"id":"mag:2293077141","is_oa":false,"landing_page_url":"https://diglib.eg.org:443/handle/10.2312/vcbm20151207","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Eurographics","raw_type":null}],"best_oa_location":{"id":"pmh:oai:eprints.gold.ac.uk:17592","is_oa":true,"landing_page_url":"https://research.gold.ac.uk/view/goldsmiths/Todd=3AStephen=3A=3A.html>;","pdf_url":"https://research.gold.ac.uk/17592/1/paper1016-FoldSynth-v4-correct.pdf","source":{"id":"https://openalex.org/S4306400496","display_name":"Goldsmiths (University of London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I166337079","host_organization_name":"Queen Mary University of London","host_organization_lineage":["https://openalex.org/I166337079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"public"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2293077141.pdf","grobid_xml":"https://content.openalex.org/works/W2293077141.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W262549320","https://openalex.org/W1969133571","https://openalex.org/W1974223852","https://openalex.org/W1977157584","https://openalex.org/W1983517245","https://openalex.org/W1992412606","https://openalex.org/W1992790497","https://openalex.org/W2009576540","https://openalex.org/W2014280607","https://openalex.org/W2033168624","https://openalex.org/W2036488627","https://openalex.org/W2073026107","https://openalex.org/W2073338313","https://openalex.org/W2080993455","https://openalex.org/W2090037139","https://openalex.org/W2104167089","https://openalex.org/W2130479394","https://openalex.org/W2141366228","https://openalex.org/W2152320247","https://openalex.org/W2155871507","https://openalex.org/W2244686166","https://openalex.org/W2267499985","https://openalex.org/W3207224001"],"related_works":["https://openalex.org/W2157331368","https://openalex.org/W2950671896","https://openalex.org/W2030987040","https://openalex.org/W2117959462","https://openalex.org/W1971324973","https://openalex.org/W1963821710","https://openalex.org/W2071883589","https://openalex.org/W2158247504","https://openalex.org/W3040264685","https://openalex.org/W1480654867","https://openalex.org/W2156336268","https://openalex.org/W2023051572","https://openalex.org/W2051599956","https://openalex.org/W2338184130","https://openalex.org/W1825208986","https://openalex.org/W981199809","https://openalex.org/W2074066424","https://openalex.org/W1976586954","https://openalex.org/W2098492528","https://openalex.org/W2010693172"],"abstract_inverted_index":{"FoldSynth":[0],"is":[1,52,100,128],"an":[2,20],"interactive":[3,38,102],"platform":[4],"designed":[5],"to":[6,34,107,173,175],"help":[7],"understand":[8,174],"the":[9,41,90,116,125,136,142,159],"characteristics":[10],"and":[11,24,43,103,114,139,165],"commonly":[12],"used":[13,106],"visual":[14],"abstractions":[15],"of":[16,31,40,48,72,92],"molecular":[17,32,50,151],"strands":[18],"with":[19,87],"emphasis":[21],"on":[22],"proteins":[23],"DNA.":[25],"It":[26],"uses":[27],"a":[28,49,55,60,109,132],"simple":[29],"model":[30],"forces":[33],"give":[35],"real":[36],"time":[37],"animations":[39],"folding":[42,117],"docking":[44],"processes.":[45],"The":[46,97],"shape":[47],"strand":[51],"shown":[53,86],"as":[54,77,94],"3D":[56,126,160],"visualisation":[57,99,127,144],"floating":[58],"above":[59],"2D":[61,98,143],"triangular":[62],"matrix":[63],"representing":[64,89],"distance":[65],"constraints,":[66,112],"contact":[67,82],"maps":[68,83],"or":[69,119],"other":[70],"features":[71],"residue":[73],"pairs.":[74],"As":[75],"well":[76],"more":[78,129],"conventional":[79],"raster":[80],"plots,":[81],"can":[84,104],"be":[85,105],"vectors":[88],"grouping":[91],"contacts":[93],"secondary":[95],"structures.":[96],"also":[101],"manipulate":[108],"molecule,":[110],"define":[111],"control":[113],"view":[115],"dynamically,":[118],"even":[120],"design":[121],"new":[122],"molecules.":[123],"While":[124],"realistic":[130],"showing":[131],"molecule":[133],"representation":[134],"approximating":[135],"physical":[137],"behavior":[138],"spatial":[140],"properties,":[141],"offers":[145],"greater":[146],"visibility,":[147],"in":[148,157],"that":[149],"all":[150],"positions":[152],"(and":[153],"pairings)":[154],"are":[155,170],"always":[156],"view;":[158],"mode":[161],"may":[162],"suffer":[163],"occlusions":[164],"create":[166],"complex":[167],"views":[168],"which":[169],"typically":[171],"hard":[172],"humans.":[176]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
