{"id":"https://openalex.org/W2162241392","doi":"https://doi.org/10.2312/vissym/eurovis05/093-100","title":"Visualization for Validation and Improvement of Three-dimensional Segmentation Algorithms","display_name":"Visualization for Validation and Improvement of Three-dimensional Segmentation Algorithms","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W2162241392","doi":"https://doi.org/10.2312/vissym/eurovis05/093-100","mag":"2162241392"},"language":"en","primary_location":{"id":"pmh:oai:escholarship.org/ark:/13030/qt3mk1b0g6","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/3mk1b0g6","pdf_url":"https://escholarship.org/uc/item/3mk1b0g6","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://escholarship.org/uc/item/3mk1b0g6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101451813","display_name":"Gunther H. Weber","orcid":"https://orcid.org/0000-0002-1794-1398"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Weber, Gunther H.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055325050","display_name":"Cris L. Luengo Hendriks","orcid":"https://orcid.org/0000-0002-8279-1760"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hendriks, Cris L. Luengo","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106183243","display_name":"Soile V.E. Ker\u00e4nen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ker\u00e4nen, Soile V. E.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111935550","display_name":"Scott Dillard","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dillard, Scott E.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062181060","display_name":"Derek Y. Ju","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ju, Derek Y.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062658603","display_name":"Damir Sudar","orcid":"https://orcid.org/0000-0002-2510-7272"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sudar, Damir","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5077191719","display_name":"Bernd Hamann","orcid":"https://orcid.org/0000-0002-3579-5005"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hamann, Bernd","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5101451813"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10481","display_name":"Computer Graphics and Visualization Techniques","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1704","display_name":"Computer Graphics and Computer-Aided Design"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10719","display_name":"3D Shape Modeling and Analysis","score":0.9718999862670898,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.8461273908615112},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7598077058792114},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7437716722488403},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.511576235294342},{"id":"https://openalex.org/keywords/scale-space-segmentation","display_name":"Scale-space segmentation","score":0.5036417841911316},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4856216013431549},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.48453015089035034},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40439513325691223},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.40173983573913574},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.37545979022979736}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.8461273908615112},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7598077058792114},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7437716722488403},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.511576235294342},{"id":"https://openalex.org/C65885262","wikidata":"https://www.wikidata.org/wiki/Q7429708","display_name":"Scale-space segmentation","level":4,"score":0.5036417841911316},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4856216013431549},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.48453015089035034},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40439513325691223},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.40173983573913574},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.37545979022979736},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"pmh:oai:escholarship.org/ark:/13030/qt3mk1b0g6","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/3mk1b0g6","pdf_url":"https://escholarship.org/uc/item/3mk1b0g6","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:qt3mk1b0g6","is_oa":true,"landing_page_url":"http://www.escholarship.org/uc/item/3mk1b0g6","pdf_url":"http://www.escholarship.org/uc/item/3mk1b0g6","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Weber, Gunther H.; Hendriks Luengo, Cristian Luis; Ker\u00e4nen, Soile V. E.; Dillard, Scott E.; Ju, Derek; Sudar, Damir; \u00a0et al.Brodlie, Ken; Duke, David; & Joy, Ken eds. (2005). Visualization for Validation and Improvement of Three-dimensional Segmentation Algorithms. UC Davis: Institute for Data Analysis and Visualization. Retrieved from: http://www.escholarship.org/uc/item/3mk1b0g6","raw_type":"article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.106.4824","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.106.4824","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://clluengo.lbl.gov/Documents/EuroVis2005.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.297.7933","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.297.7933","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://graphics.cs.ucdavis.edu/~hamann/WeberLuengoHendriksKeraenenDillardJuSudarHamann2005.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.461.8116","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.461.8116","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://graphics.cs.ucdavis.edu/publications/func/return_pdf?pub_id=830","raw_type":"text"},{"id":"doi:10.2312/vissym/eurovis05/093-100","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vissym/eurovis05/093-100","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:escholarship.org/ark:/13030/qt3mk1b0g6","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/3mk1b0g6","pdf_url":"https://escholarship.org/uc/item/3mk1b0g6","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2162241392.pdf"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W10991292","https://openalex.org/W1483942368","https://openalex.org/W1753524162","https://openalex.org/W1990028735","https://openalex.org/W1991138583","https://openalex.org/W1999468279","https://openalex.org/W2050995940","https://openalex.org/W2073881036","https://openalex.org/W2106018887","https://openalex.org/W2107679877","https://openalex.org/W2138147496","https://openalex.org/W2138867322","https://openalex.org/W2208332410"],"related_works":["https://openalex.org/W2293301496","https://openalex.org/W1926682734","https://openalex.org/W1970611140","https://openalex.org/W3033323309","https://openalex.org/W2362976102","https://openalex.org/W2805412845","https://openalex.org/W2947830256","https://openalex.org/W140103928","https://openalex.org/W1608717267","https://openalex.org/W1994465268","https://openalex.org/W1944280834","https://openalex.org/W2280213546","https://openalex.org/W1600963972","https://openalex.org/W2150720718","https://openalex.org/W2006400568","https://openalex.org/W1971452799","https://openalex.org/W139576495","https://openalex.org/W2568683348","https://openalex.org/W1502600718","https://openalex.org/W2051234091"],"abstract_inverted_index":{"The":[0],"Berkeley":[1],"DrosophilaTranscription":[2],"Network":[3],"Project":[4],"(BDTNP)":[5],"is":[6,128],"developing":[7],"a":[8,15,83,114,136,157],"suite":[9],"of":[10,20,37,46,58,63,77,99,102,106,121,189,191],"methods":[11],"that":[12,42],"will":[13],"allow":[14],"quantitative":[16,97],"description":[17],"and":[18,52,54,75,96,124,140,163,182],"analysis":[19,188],"three":[21],"dimensional":[22],"(3D)":[23],"gene":[24,59],"expression":[25],"patterns":[26],"in":[27,135,150,179],"an":[28,47],"animal":[29,193],"with":[30,90,110,146],"cel-":[31],"lular":[32],"resolution.":[33],"An":[34],"important":[35],"component":[36],"this":[38],"approach":[39],"are":[40,67,108],"algorithms":[41],"segment":[43],"3D":[44],"images":[45,190],"organism":[48],"into":[49],"individual":[50,132],"nuclei":[51,107,133],"cells":[53],"measure":[55],"relative":[56],"levels":[57],"expression.":[60],"As":[61],"part":[62],"the":[64,100,119,184],"BDTNP,":[65],"we":[66,81],"devel-":[68],"oping":[69],"tools":[70],"for":[71],"interactive":[72],"visualization,":[73],"control,":[74],"verification":[76],"these":[78],"algorithms.":[79],"Here":[80],"present":[82],"volume":[84,137],"visualization":[85],"prototype":[86],"system":[87],"that,":[88],"combined":[89,109],"user":[91],"interaction":[92],"tools,":[93],"supports":[94],"validation":[95],"determination":[98],"accuracy":[101,181],"nuclear":[103,115],"segmentation.":[104,126],"Visualizations":[105],"information":[111,166],"obtained":[112],"from":[113],"segmentation":[116,147,158,180],"mask,":[117],"supporting":[118],"comparison":[120],"raw":[122],"data":[123],"its":[125],"It":[127],"possible":[129,154],"to":[130,155,176,186],"select":[131],"interactively":[134],"rendered":[138],"image":[139],"identify":[141],"incorrectly":[142,168],"segmented":[143,169],"objects.":[144,170],"Integration":[145],"algorithms,":[148],"implemented":[149],"MATLAB,":[151],"makes":[152],"it":[153],"modify":[156],"based":[159],"on":[160],"visual":[161],"examination":[162],"obtain":[164],"additional":[165],"about":[167],"This":[171],"work":[172],"has":[173],"already":[174],"led":[175],"significant":[177],"improvements":[178],"opens":[183],"way":[185],"enhanced":[187],"complex":[192],"morphologies.":[194]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}