{"id":"https://openalex.org/W3019424912","doi":"https://doi.org/10.2312/visgap.20201112","title":"Tales from the Trenches: Developing sciview, a new 3D viewer for the ImageJ community","display_name":"Tales from the Trenches: Developing sciview, a new 3D viewer for the ImageJ community","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3019424912","doi":"https://doi.org/10.2312/visgap.20201112","mag":"3019424912"},"language":"en","primary_location":{"id":"mag:3019424912","is_oa":true,"landing_page_url":"http://export.arxiv.org/pdf/2004.11897","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://export.arxiv.org/pdf/2004.11897","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029419283","display_name":"Ulrik G\u00fcnther","orcid":"https://orcid.org/0000-0002-1179-8228"},"institutions":[{"id":"https://openalex.org/I4210086037","display_name":"Max Planck Innovation","ror":"https://ror.org/00d0v0049","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210086037"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"G\u00fcnther, Ulrik","raw_affiliation_strings":["Max Planck Society, Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Max Planck Society, Munich, Germany","institution_ids":["https://openalex.org/I4210086037","https://openalex.org/I149899117"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069859821","display_name":"Kyle Harrington","orcid":"https://orcid.org/0000-0002-7237-1973"},"institutions":[{"id":"https://openalex.org/I1316535847","display_name":"Beth Israel Deaconess Medical Center","ror":"https://ror.org/04drvxt59","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1316535847"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Harrington, Kyle I. S.","raw_affiliation_strings":["Beth Israel Deaconess Medical Center, Boston, United States"],"affiliations":[{"raw_affiliation_string":"Beth Israel Deaconess Medical Center, Boston, United States","institution_ids":["https://openalex.org/I1316535847"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5029419283"],"corresponding_institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210086037"],"apc_list":null,"apc_paid":null,"fwci":0.2262,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.73130935,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9876000285148621,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9304999709129333,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6984700560569763},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6958079934120178},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.6677003502845764},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5886626243591309},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5041474103927612},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.4418962001800537},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.43729472160339355},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.43714195489883423},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.4158604145050049},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4130532741546631},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.37181979417800903},{"id":"https://openalex.org/keywords/multimedia","display_name":"Multimedia","score":0.3255345821380615},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.31503936648368835},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21278631687164307},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07330378890037537}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6984700560569763},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6958079934120178},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.6677003502845764},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5886626243591309},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5041474103927612},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.4418962001800537},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.43729472160339355},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.43714195489883423},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.4158604145050049},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4130532741546631},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.37181979417800903},{"id":"https://openalex.org/C49774154","wikidata":"https://www.wikidata.org/wiki/Q131765","display_name":"Multimedia","level":1,"score":0.3255345821380615},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.31503936648368835},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21278631687164307},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07330378890037537},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"mag:3019424912","is_oa":true,"landing_page_url":"http://export.arxiv.org/pdf/2004.11897","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.2004.11897","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2004.11897","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"},{"id":"doi:10.2312/visgap.20201112","is_oa":true,"landing_page_url":"https://doi.org/10.2312/visgap.20201112","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"mag:3019424912","is_oa":true,"landing_page_url":"http://export.arxiv.org/pdf/2004.11897","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1479970844","https://openalex.org/W1580913419","https://openalex.org/W1835740130","https://openalex.org/W2037947871","https://openalex.org/W2065311834","https://openalex.org/W2099540110","https://openalex.org/W2104827963","https://openalex.org/W2156755609","https://openalex.org/W2167279371","https://openalex.org/W2170358380","https://openalex.org/W2510494910","https://openalex.org/W2580035316","https://openalex.org/W2901326791","https://openalex.org/W2972002502","https://openalex.org/W2994959376","https://openalex.org/W3001659371","https://openalex.org/W3147279153"],"related_works":["https://openalex.org/W2958496169","https://openalex.org/W279100545","https://openalex.org/W3029949409","https://openalex.org/W2469456174","https://openalex.org/W1667264604","https://openalex.org/W3019947027","https://openalex.org/W2955889370","https://openalex.org/W2971946332","https://openalex.org/W3169798298","https://openalex.org/W2320119802","https://openalex.org/W2236244916","https://openalex.org/W2204027229","https://openalex.org/W2052883166","https://openalex.org/W3047845279","https://openalex.org/W2001589411","https://openalex.org/W172643630","https://openalex.org/W2589094939","https://openalex.org/W162120830","https://openalex.org/W2997192882","https://openalex.org/W2154689212"],"abstract_inverted_index":{"ImageJ/Fiji":[0],"is":[1,28,55],"a":[2,120],"widely-used":[3],"tool":[4,40],"in":[5],"the":[6,69,75,80,89,111,114,130],"biomedical":[7],"community":[8,102],"for":[9,113,123,135],"performing":[10],"everyday":[11],"image":[12],"analysis":[13],"tasks.":[14],"However,":[15],"its":[16],"3D":[17,22],"viewer":[18],"component":[19],"(aptly":[20],"named":[21],"Viewer)":[23],"has":[24],"become":[25],"dated":[26],"and":[27,47,79,92,104,133],"no":[29],"longer":[30],"actively":[31],"maintained.":[32],"We":[33,109,126],"set":[34],"out":[35],"to":[36,52,57,60],"create":[37],"an":[38,97],"alternative":[39],"that":[41],"not":[42],"only":[43],"brings":[44],"modern":[45],"concepts":[46],"APIs":[48],"from":[49],"computer":[50],"graphics":[51],"ImageJ,":[53],"but":[54],"designed":[56],"be":[58],"robust":[59],"long-term,":[61],"open-source":[62],"development.":[63],"To":[64],"achieve":[65],"this":[66,85],"we":[67,87],"divided":[68],"visualization":[70],"logic":[71],"into":[72],"two":[73],"parts:":[74],"rendering":[76],"framework,":[77],"scenery,":[78],"user-facing":[81],"application,":[82],"sciview.":[83],"In":[84],"paper":[86],"describe":[88],"development":[90],"process":[91],"design":[93],"decisions":[94],"made,":[95],"putting":[96],"emphasis":[98],"on":[99],"sustainable":[100],"development,":[101],"building,":[103],"software":[105],"engineering":[106],"best":[107],"practises.":[108],"highlight":[110],"motivation":[112],"Java":[115],"Virtual":[116],"Machine":[117],"(JVM)":[118],"as":[119],"target":[121],"platform":[122],"visualisation":[124],"applications.":[125],"conclude":[127],"by":[128],"discussing":[129],"remaining":[131],"milestones":[132],"strategy":[134],"long-term":[136],"sustainability.":[137]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
