{"id":"https://openalex.org/W2980265416","doi":"https://doi.org/10.2312/vcbm.20191248","title":"Molecular Sombreros: Abstract Visualization of Binding Sites within Proteins","display_name":"Molecular Sombreros: Abstract Visualization of Binding Sites within Proteins","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2980265416","doi":"https://doi.org/10.2312/vcbm.20191248","mag":"2980265416"},"language":"en","primary_location":{"id":"doi:10.2312/vcbm.20191248","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20191248","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2312/vcbm.20191248","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030030785","display_name":"Karsten Schatz","orcid":"https://orcid.org/0000-0001-8658-5983"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Schatz, Karsten","raw_affiliation_strings":["University of Stuttgart, Stuttgart, Germany"],"affiliations":[{"raw_affiliation_string":"University of Stuttgart, Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003476748","display_name":"Michael Krone","orcid":"https://orcid.org/0000-0002-1445-7568"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Krone, Michael","raw_affiliation_strings":["University of Stuttgart, Stuttgart, Germany"],"affiliations":[{"raw_affiliation_string":"University of Stuttgart, Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070359958","display_name":"Tabea L. Bauer","orcid":"https://orcid.org/0000-0002-1582-442X"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bauer, Tabea L.","raw_affiliation_strings":["University of Stuttgart, Stuttgart, Germany"],"affiliations":[{"raw_affiliation_string":"University of Stuttgart, Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103027251","display_name":"Valerio Ferrario","orcid":"https://orcid.org/0000-0002-4233-4805"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ferrario, Valerio","raw_affiliation_strings":["University of Stuttgart, Stuttgart, Germany"],"affiliations":[{"raw_affiliation_string":"University of Stuttgart, Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067406221","display_name":"J\u00fcrgen Pleiss","orcid":"https://orcid.org/0000-0003-1045-8202"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pleiss, J\u00fcrgen","raw_affiliation_strings":["University of Stuttgart, Stuttgart, Germany"],"affiliations":[{"raw_affiliation_string":"University of Stuttgart, Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038629539","display_name":"Thomas Ertl","orcid":"https://orcid.org/0000-0003-4019-2505"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ertl, Thomas","raw_affiliation_strings":["University of Stuttgart, Stuttgart, Germany"],"affiliations":[{"raw_affiliation_string":"University of Stuttgart, Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5030030785"],"corresponding_institution_ids":["https://openalex.org/I100066346"],"apc_list":null,"apc_paid":null,"fwci":0.0852,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.47507357,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":93},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.7480999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.7480999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.661899983882904,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6974993944168091},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5902997851371765},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39215314388275146},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.20040881633758545},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13723570108413696}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6974993944168091},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5902997851371765},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39215314388275146},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.20040881633758545},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13723570108413696}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.2312/vcbm.20191248","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20191248","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2312/vcbm.20191248","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20191248","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1785807738","https://openalex.org/W2968878505","https://openalex.org/W2213039352","https://openalex.org/W1987688066","https://openalex.org/W2588296599","https://openalex.org/W2582817980","https://openalex.org/W2032097965","https://openalex.org/W1713855780"],"abstract_inverted_index":{"We":[0,175],"present":[1],"a":[2,47,101,108],"novel":[3,79],"abstract":[4,80],"visualization":[5,81,106],"for":[6,134],"the":[7,40,51,55,66,83,86,92,97,111,114,119,121,131,157,160,177],"binding":[8,69,87],"sites":[9,13],"of":[10,39,68,159,171,179],"proteins.":[11],"Binding":[12],"play":[14],"an":[15,167],"essential":[16],"role":[17],"in":[18,26,100],"enzymatic":[19],"reactions":[20],"and":[21,37,44,118],"are,":[22],"thus,":[23],"often":[24],"investigated":[25],"structural":[27],"biology.":[28],"They":[29],"are":[30,72],"typically":[31,73],"located":[32],"within":[33],"cavities.":[34],"The":[35,104,162],"shape":[36,158],"properties":[38],"cavity":[41,84,98,151],"influence":[42],"whether":[43],"how":[45],"easily":[46],"substrate":[48],"can":[49,62],"reach":[50],"active":[52],"site":[53,88],"where":[54,110],"reaction":[56],"is":[57,138],"triggered.":[58],"Molecular":[59,128,181],"surface":[60,93,116,144],"visualizations":[61],"help":[63],"to":[64,75,156,183],"analyze":[65],"accessibility":[67],"sites,":[70],"but":[71],"prone":[74],"visual":[76,163],"clutter.":[77],"Our":[78,136],"shows":[82],"containing":[85],"as":[89,91],"well":[90],"region":[94,117],"directly":[95],"surrounding":[96,115],"entrance":[99],"simplified":[102],"manner.":[103],"resulting":[105],"resembles":[107],"hat,":[109],"brim":[112],"depicts":[113],"crown":[120],"cavity.":[122],"Hence,":[123],"we":[124],"dubbed":[125],"our":[126,180],"abstraction":[127,137,164],"Sombrero,":[129],"using":[130],"Spanish":[132],"term":[133],"'hat'.":[135],"less":[139],"cluttered":[140],"than":[141],"traditional":[142],"molecular":[143],"visualizations.":[145],"It":[146],"highlights":[147],"important":[148],"parameters,":[149],"like":[150],"diameter,":[152],"by":[153],"mapping":[154],"them":[155],"sombrero.":[161],"also":[165],"facilitates":[166],"easy":[168],"side-by-side":[169],"comparison":[170],"different":[172,184],"data":[173],"sets.":[174],"show":[176],"applicability":[178],"Sombreros":[182],"real-world":[185],"use":[186],"cases.":[187]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
