{"id":"https://openalex.org/W2563316274","doi":"https://doi.org/10.2312/vcbm.20161268","title":"Visual Analysis and Comparison of Multiple Sequence Alignments","display_name":"Visual Analysis and Comparison of Multiple Sequence Alignments","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2563316274","doi":"https://doi.org/10.2312/vcbm.20161268","mag":"2563316274"},"language":"en","primary_location":{"id":"pmh:oai:tubiblio.ulb.tu-darmstadt.de:83059","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196390","display_name":"TUbilio (Technical University of Darmstadt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I31512782","host_organization_name":"Technische Universit\u00e4t Darmstadt","host_organization_lineage":["https://openalex.org/I31512782"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Konferenzver\u00f6ffentlichung"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2312/vcbm.20161268","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101498642","display_name":"Martin He\u00df","orcid":"https://orcid.org/0000-0001-5827-2736"},"institutions":[{"id":"https://openalex.org/I31512782","display_name":"Technical University of Darmstadt","ror":"https://ror.org/05n911h24","country_code":"DE","type":"education","lineage":["https://openalex.org/I31512782"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Hess, Martin","raw_affiliation_strings":["TU Darmstadt Germany#TAB#"],"affiliations":[{"raw_affiliation_string":"TU Darmstadt Germany#TAB#","institution_ids":["https://openalex.org/I31512782"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082547077","display_name":"Daniel Jente","orcid":null},"institutions":[{"id":"https://openalex.org/I31512782","display_name":"Technical University of Darmstadt","ror":"https://ror.org/05n911h24","country_code":"DE","type":"education","lineage":["https://openalex.org/I31512782"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jente, Daniel","raw_affiliation_strings":["TU Darmstadt Germany#TAB#"],"affiliations":[{"raw_affiliation_string":"TU Darmstadt Germany#TAB#","institution_ids":["https://openalex.org/I31512782"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060544282","display_name":"Josef Wiemeyer","orcid":"https://orcid.org/0000-0003-2958-7653"},"institutions":[{"id":"https://openalex.org/I31512782","display_name":"Technical University of Darmstadt","ror":"https://ror.org/05n911h24","country_code":"DE","type":"education","lineage":["https://openalex.org/I31512782"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wiemeyer, Josef","raw_affiliation_strings":["TU Darmstadt Germany#TAB#"],"affiliations":[{"raw_affiliation_string":"TU Darmstadt Germany#TAB#","institution_ids":["https://openalex.org/I31512782"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063890041","display_name":"Kay Hamacher","orcid":"https://orcid.org/0000-0002-6921-8345"},"institutions":[{"id":"https://openalex.org/I31512782","display_name":"Technical University of Darmstadt","ror":"https://ror.org/05n911h24","country_code":"DE","type":"education","lineage":["https://openalex.org/I31512782"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hamacher, Kay","raw_affiliation_strings":["TU Darmstadt Germany#TAB#"],"affiliations":[{"raw_affiliation_string":"TU Darmstadt Germany#TAB#","institution_ids":["https://openalex.org/I31512782"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066521879","display_name":"Michael Goesele","orcid":"https://orcid.org/0000-0002-0944-0980"},"institutions":[{"id":"https://openalex.org/I31512782","display_name":"Technical University of Darmstadt","ror":"https://ror.org/05n911h24","country_code":"DE","type":"education","lineage":["https://openalex.org/I31512782"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Goesele, Michael","raw_affiliation_strings":["TU Darmstadt Germany#TAB#"],"affiliations":[{"raw_affiliation_string":"TU Darmstadt Germany#TAB#","institution_ids":["https://openalex.org/I31512782"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101498642"],"corresponding_institution_ids":["https://openalex.org/I31512782"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9782000184059143,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9742000102996826,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7595862746238708},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.6971385478973389},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6179389357566833},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5955127477645874},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.578235387802124},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5441968441009521},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.5007760524749756},{"id":"https://openalex.org/keywords/visual-inspection","display_name":"Visual inspection","score":0.4838389456272125},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.47515010833740234},{"id":"https://openalex.org/keywords/quality-assessment","display_name":"Quality assessment","score":0.47173869609832764},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4678294062614441},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.46057793498039246},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4288901686668396},{"id":"https://openalex.org/keywords/quality-score","display_name":"Quality Score","score":0.4151936173439026},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3696388006210327},{"id":"https://openalex.org/keywords/evaluation-methods","display_name":"Evaluation methods","score":0.1276734471321106},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.1059207022190094},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09173285961151123},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.08098858594894409},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07851207256317139}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7595862746238708},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.6971385478973389},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6179389357566833},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5955127477645874},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.578235387802124},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5441968441009521},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5007760524749756},{"id":"https://openalex.org/C168820333","wikidata":"https://www.wikidata.org/wiki/Q448889","display_name":"Visual inspection","level":2,"score":0.4838389456272125},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.47515010833740234},{"id":"https://openalex.org/C3020001037","wikidata":"https://www.wikidata.org/wiki/Q836575","display_name":"Quality assessment","level":3,"score":0.47173869609832764},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4678294062614441},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.46057793498039246},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4288901686668396},{"id":"https://openalex.org/C2779346075","wikidata":"https://www.wikidata.org/wiki/Q7268763","display_name":"Quality Score","level":3,"score":0.4151936173439026},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3696388006210327},{"id":"https://openalex.org/C3018395757","wikidata":"https://www.wikidata.org/wiki/Q1379672","display_name":"Evaluation methods","level":2,"score":0.1276734471321106},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.1059207022190094},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09173285961151123},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.08098858594894409},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07851207256317139},{"id":"https://openalex.org/C200601418","wikidata":"https://www.wikidata.org/wiki/Q2193887","display_name":"Reliability engineering","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:tubiblio.ulb.tu-darmstadt.de:83059","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196390","display_name":"TUbilio (Technical University of Darmstadt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I31512782","host_organization_name":"Technische Universit\u00e4t Darmstadt","host_organization_lineage":["https://openalex.org/I31512782"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Konferenzver\u00f6ffentlichung"},{"id":"doi:10.2312/vcbm.20161268","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20161268","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.2312/vcbm.20161268","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20161268","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[{"score":0.7599999904632568,"id":"https://metadata.un.org/sdg/11","display_name":"Sustainable cities and communities"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1519266993","https://openalex.org/W1892731544","https://openalex.org/W1970858544","https://openalex.org/W1984814148","https://openalex.org/W2002638840","https://openalex.org/W2002805476","https://openalex.org/W2007924998","https://openalex.org/W2043046527","https://openalex.org/W2065001361","https://openalex.org/W2074830661","https://openalex.org/W2081131647","https://openalex.org/W2099365510","https://openalex.org/W2106882534","https://openalex.org/W2110534451","https://openalex.org/W2111551123","https://openalex.org/W2120772351","https://openalex.org/W2127322768","https://openalex.org/W2127774996","https://openalex.org/W2134595458","https://openalex.org/W2137015675","https://openalex.org/W2141411672","https://openalex.org/W2143210482","https://openalex.org/W2149531726","https://openalex.org/W2153187042","https://openalex.org/W2170831688","https://openalex.org/W2170964688","https://openalex.org/W2265063908","https://openalex.org/W2344155264"],"related_works":["https://openalex.org/W1572782135","https://openalex.org/W1892731544","https://openalex.org/W1999079484","https://openalex.org/W177929877","https://openalex.org/W2467301120","https://openalex.org/W2271773999","https://openalex.org/W2143867397","https://openalex.org/W2094344445","https://openalex.org/W2159591337","https://openalex.org/W2139837850","https://openalex.org/W3027143546","https://openalex.org/W1578475260","https://openalex.org/W3154798044","https://openalex.org/W1955019837","https://openalex.org/W2835735115","https://openalex.org/W2067364375","https://openalex.org/W2398678046","https://openalex.org/W173489286","https://openalex.org/W2891880995","https://openalex.org/W3189064623"],"abstract_inverted_index":{"Multiple":[0],"Sequence":[1],"Alignments":[2],"(MSA)":[3],"of":[4,7,31,46,86,97,113,117,121,128,148],"a":[5,51,125],"set":[6,120],"DNA,":[8],"RNA":[9],"or":[10],"protein":[11,26],"sequences":[12],"form":[13],"the":[14,64,84,89,93,111,118,129],"fundamental":[15],"basis":[16],"for":[17,88,154],"various":[18],"biological":[19],"applications":[20],"such":[21],"as":[22],"evolutionary":[23],"heritage":[24],"and":[25,41,62,92,142],"structure":[27],"prediction.":[28],"The":[29,44],"quality":[30,72,95,112,131,140,156],"an":[32,58,104],"MSA":[33,66,71,155],"is":[34,57,67,74],"crucial":[35],"in":[36,136],"order":[37],"to":[38,83,108],"provide":[39,124],"useful":[40],"correct":[42],"results.":[43],"analysis":[45,73],"MSAs":[47,56,116],"is,":[48],"however,":[49],"still":[50],"challenging":[52],"task":[53],"since":[54],"constructing":[55],"NP":[59],"hard":[60],"problem":[61],"thus":[63],"optimal":[65],"usually":[68],"unknown.":[69],"Additionally,":[70],"often":[75],"completely":[76],"ignored,":[77],"especially":[78],"by":[79],"non-expert":[80],"users,":[81],"due":[82],"lack":[85],"tools":[87],"visual":[90,106],"comparison":[91],"intuitive":[94],"assessment":[96,127],"alignments.":[98],"In":[99],"this":[100],"paper,":[101],"we":[102],"present":[103],"interactive":[105],"approach":[107,150],"simultaneously":[109],"assess":[110],"multiple":[114],"alternative":[115],"same":[119],"sequences.":[122],"We":[123],"direct":[126],"alignment":[130],"using":[132],"different":[133],"highlighting":[134],"techniques":[135],"combination":[137],"with":[138],"automatic":[139],"measures":[141],"editing":[143],"capabilities.":[144],"An":[145],"in-depth":[146],"evaluation":[147],"our":[149],"highlights":[151],"its":[152],"benefits":[153],"assessment.":[157]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
