{"id":"https://openalex.org/W2520869755","doi":"https://doi.org/10.2312/vcbm.20161267","title":"Illustrative Transitions in Molecular Visualization via Forward and Inverse Abstraction Transform","display_name":"Illustrative Transitions in Molecular Visualization via Forward and Inverse Abstraction Transform","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2520869755","doi":"https://doi.org/10.2312/vcbm.20161267","mag":"2520869755"},"language":"en","primary_location":{"id":"doi:10.2312/vcbm.20161267","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20161267","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2312/vcbm.20161267","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087063362","display_name":"Johannes Sorger","orcid":"https://orcid.org/0000-0002-5212-8941"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]},{"id":"https://openalex.org/I1343190059","display_name":"VRVis GmbH (Austria)","ror":"https://ror.org/02xyxvc90","country_code":"AT","type":"company","lineage":["https://openalex.org/I1343190059"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Sorger, Johannes","raw_affiliation_strings":["TU Wien, Vienna, Austria and VRVis Research Company, Vienna, Austria#TAB#"],"affiliations":[{"raw_affiliation_string":"TU Wien, Vienna, Austria and VRVis Research Company, Vienna, Austria#TAB#","institution_ids":["https://openalex.org/I1343190059","https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088614523","display_name":"Peter Mindek","orcid":"https://orcid.org/0000-0002-9434-5952"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Mindek, Peter","raw_affiliation_strings":["TU Wien, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"TU Wien, Vienna, Austria","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005537804","display_name":"Tobias Klein","orcid":"https://orcid.org/0000-0001-9455-7587"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Klein, Tobias","raw_affiliation_strings":["TU Wien, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"TU Wien, Vienna, Austria","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101433137","display_name":"Graham Johnson","orcid":"https://orcid.org/0000-0002-4456-6909"},"institutions":[{"id":"https://openalex.org/I4210164942","display_name":"Allen Institute for Cell Science","ror":"https://ror.org/05kg6bp11","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210140341","https://openalex.org/I4210164942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Johnson, Graham","raw_affiliation_strings":["Allen institute for Cell Science"],"affiliations":[{"raw_affiliation_string":"Allen institute for Cell Science","institution_ids":["https://openalex.org/I4210164942"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022294742","display_name":"Ivan Viola","orcid":"https://orcid.org/0000-0003-4248-6574"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Viola, Ivan","raw_affiliation_strings":["TU Wien, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"TU Wien, Vienna, Austria","institution_ids":["https://openalex.org/I145847075"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5087063362"],"corresponding_institution_ids":["https://openalex.org/I1343190059","https://openalex.org/I145847075"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"21","last_page":"30"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.939300000667572,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.7211135625839233},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6938146352767944},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5660192370414734},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.5389026403427124},{"id":"https://openalex.org/keywords/interpolation","display_name":"Interpolation (computer graphics)","score":0.5354487895965576},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5040601491928101},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.4867680072784424},{"id":"https://openalex.org/keywords/basis","display_name":"Basis (linear algebra)","score":0.473497211933136},{"id":"https://openalex.org/keywords/transformation","display_name":"Transformation (genetics)","score":0.4726152718067169},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.338020384311676},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3217760920524597},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22110092639923096},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11235466599464417},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.09014606475830078}],"concepts":[{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.7211135625839233},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6938146352767944},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5660192370414734},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.5389026403427124},{"id":"https://openalex.org/C137800194","wikidata":"https://www.wikidata.org/wiki/Q11713455","display_name":"Interpolation (computer graphics)","level":3,"score":0.5354487895965576},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5040601491928101},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.4867680072784424},{"id":"https://openalex.org/C12426560","wikidata":"https://www.wikidata.org/wiki/Q189569","display_name":"Basis (linear algebra)","level":2,"score":0.473497211933136},{"id":"https://openalex.org/C204241405","wikidata":"https://www.wikidata.org/wiki/Q461499","display_name":"Transformation (genetics)","level":3,"score":0.4726152718067169},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.338020384311676},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3217760920524597},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22110092639923096},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11235466599464417},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.09014606475830078},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.2312/vcbm.20161267","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20161267","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"},{"id":"mag:2520869755","is_oa":false,"landing_page_url":"http://dblp.uni-trier.de/db/conf/vcbm/vcbm2016.html#SorgerMKJV16","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Eurographics","raw_type":null}],"best_oa_location":{"id":"doi:10.2312/vcbm.20161267","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20161267","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.5299999713897705}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W204297397","https://openalex.org/W1538591984","https://openalex.org/W1578639176","https://openalex.org/W1974035453","https://openalex.org/W2010997497","https://openalex.org/W2023029656","https://openalex.org/W2030246490","https://openalex.org/W2035309916","https://openalex.org/W2071883589","https://openalex.org/W2076167793","https://openalex.org/W2101627777","https://openalex.org/W2105893525","https://openalex.org/W2108075477","https://openalex.org/W2108230739","https://openalex.org/W2110080554","https://openalex.org/W2113403117","https://openalex.org/W2116082799","https://openalex.org/W2120514074","https://openalex.org/W2120568174","https://openalex.org/W2123817333","https://openalex.org/W2125215841","https://openalex.org/W2134398209","https://openalex.org/W2151991601","https://openalex.org/W2157900633","https://openalex.org/W2163805179","https://openalex.org/W2291468715","https://openalex.org/W2293398899","https://openalex.org/W3012871353"],"related_works":["https://openalex.org/W1568312986","https://openalex.org/W1973636170","https://openalex.org/W1490482062","https://openalex.org/W1855872172","https://openalex.org/W1521792029","https://openalex.org/W1734878544","https://openalex.org/W2097046171","https://openalex.org/W2030269333","https://openalex.org/W2052963590","https://openalex.org/W1537414068","https://openalex.org/W2122323950","https://openalex.org/W2544870969","https://openalex.org/W2063402395","https://openalex.org/W1590377173","https://openalex.org/W2372769516","https://openalex.org/W2363494976","https://openalex.org/W2080383404","https://openalex.org/W1530079218","https://openalex.org/W1607566321","https://openalex.org/W2115309634"],"abstract_inverted_index":{"A":[0],"challenging":[1],"problem":[2],"in":[3,103,121,213],"biology":[4,16],"is":[5,62,70,124],"the":[6,29,42,65,79,83,97,104,145,155,160,168,178,181,186,190,198,208,217,221],"incompleteness":[7],"of":[8,20,46,76,99,109,128,138,150,157,159,194,200,210,216],"acquired":[9],"information":[10,102],"when":[11],"visualizing":[12],"biological":[13,48,110],"phenomena.":[14],"Structural":[15],"generates":[17],"detailed":[18],"models":[19,69,81,85,133,146,169],"viruses":[21,115],"or":[22,106,116],"bacteria":[23],"at":[24,72],"different":[25,136],"development":[26],"stages,":[27],"while":[28,57],"processes":[30],"that":[31,94,134,153],"relate":[32],"one":[33,59],"stage":[34],"to":[35,180,189],"another":[36],"are":[37],"often":[38],"not":[39],"clear.":[40],"Similarly,":[41],"entire":[43],"life":[44],"cycle":[45],"a":[47,54,73,92,148],"entity":[49],"might":[50],"be":[51,87,171],"available":[52],"as":[53,114],"quantitative":[55],"model,":[56],"only":[58],"structural":[60],"model":[61],"available.":[63],"If":[64],"relation":[66,162],"between":[67,131,163],"two":[68,84,132],"specified":[71],"lower":[74],"level":[75,149,156,193],"detail":[77,158],"than":[78],"actual":[80],"themselves,":[82],"cannot":[86],"interpolated":[88,172],"correctly.":[89],"We":[90],"propose":[91],"method":[93,206],"deals":[95],"with":[96],"visualization":[98],"incomplete":[100],"data":[101,215],"developmental":[105],"evolutionary":[107],"states":[108,137],"mesoscale":[111],"models,":[112],"such":[113],"microorganisms.":[117],"The":[118],"central":[119],"tool":[120],"our":[122,201,205],"approach":[123],"visual":[125,151],"abstraction.":[126,195],"Instead":[127],"directly":[129],"interpolating":[130],"show":[135,197],"an":[139],"organism,":[140],"we":[141,184,203],"gradually":[142],"forward":[143],"transform":[144],"into":[147],"abstraction":[152],"matches":[154],"modeled":[161],"them.":[164],"At":[165],"this":[166],"level,":[167],"can":[170],"without":[173],"conveying":[174],"false":[175],"information.":[176],"After":[177],"interpolation":[179],"new":[182],"state,":[183],"apply":[185],"inverse":[187],"transformation":[188],"model\u2019's":[191],"original":[192],"To":[196],"flexibility":[199],"approach,":[202],"demonstrate":[204],"on":[207],"basis":[209],"molecular":[211],"data,":[212],"particular":[214],"HIV":[218],"virion":[219],"and":[220],"mycoplasma":[222],"bacterium.":[223]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
