{"id":"https://openalex.org/W2587402338","doi":"https://doi.org/10.2312/vcbm.20161266","title":"Chameleon - Dynamic Color Mapping for Multi-Scale Structural Biology Models","display_name":"Chameleon - Dynamic Color Mapping for Multi-Scale Structural Biology Models","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2587402338","doi":"https://doi.org/10.2312/vcbm.20161266","mag":"2587402338","pmid":"https://pubmed.ncbi.nlm.nih.gov/28361008"},"language":"en","primary_location":{"id":"pmid:28361008","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28361008","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Eurographics Workshop on Visual Computing for Biomedicine","raw_type":null},"type":"conference-paper","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":null,"any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033258658","display_name":"Nicholas Waldin","orcid":null},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Waldin, Nicholas","raw_affiliation_strings":["TU Wien"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TU Wien","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016122563","display_name":"Mathieu Le Muzic","orcid":null},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Muzic, Mathieu Le","raw_affiliation_strings":["TU Wien"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TU Wien","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061106600","display_name":"Manuela Waldner","orcid":"https://orcid.org/0000-0003-1387-5132"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Waldner, Manuela","raw_affiliation_strings":["TU Wien"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TU Wien","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110321988","display_name":"Eduard Gr\u00f6ller","orcid":null},"institutions":[{"id":"https://openalex.org/I1343190059","display_name":"VRVis GmbH (Austria)","ror":"https://ror.org/02xyxvc90","country_code":"AT","type":"company","lineage":["https://openalex.org/I1343190059"]},{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Gr\u00f6ller, Eduard","raw_affiliation_strings":["TU Wien and VRVis#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TU Wien and VRVis#TAB#","institution_ids":["https://openalex.org/I1343190059","https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040337866","display_name":"David S. Goodsell","orcid":"https://orcid.org/0000-0002-5932-2130"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Goodsell, David","raw_affiliation_strings":["Scripps Research Institute"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Scripps Research Institute","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080082986","display_name":"Ludovic Autin","orcid":"https://orcid.org/0000-0002-2197-191X"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ludovic, Autin","raw_affiliation_strings":["Scripps Research Institute"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Scripps Research Institute","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022294742","display_name":"Ivan Viola","orcid":"https://orcid.org/0000-0003-4248-6574"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Viola, Ivan","raw_affiliation_strings":["TU Wien"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TU Wien","institution_ids":["https://openalex.org/I145847075"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2016","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9733999967575073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9733999967575073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9731000065803528,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9623000025749207,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.706138014793396},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.667572557926178},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6013622283935547},{"id":"https://openalex.org/keywords/scheme","display_name":"Scheme (mathematics)","score":0.584813117980957},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.5659587979316711},{"id":"https://openalex.org/keywords/color-coding","display_name":"Color-coding","score":0.5120925903320312},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.430270791053772},{"id":"https://openalex.org/keywords/structural-biology","display_name":"Structural biology","score":0.42256468534469604},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3424531817436218},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1664249300956726},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14664548635482788},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.0733538568019867}],"concepts":[{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.706138014793396},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.667572557926178},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6013622283935547},{"id":"https://openalex.org/C77618280","wikidata":"https://www.wikidata.org/wiki/Q1155772","display_name":"Scheme (mathematics)","level":2,"score":0.584813117980957},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.5659587979316711},{"id":"https://openalex.org/C104597421","wikidata":"https://www.wikidata.org/wiki/Q5148529","display_name":"Color-coding","level":2,"score":0.5120925903320312},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.430270791053772},{"id":"https://openalex.org/C191120209","wikidata":"https://www.wikidata.org/wiki/Q908902","display_name":"Structural biology","level":2,"score":0.42256468534469604},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3424531817436218},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1664249300956726},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14664548635482788},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0733538568019867},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"pmid:28361008","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28361008","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Eurographics Workshop on Visual Computing for Biomedicine","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5370176","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5370176","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5370176","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Eurographics Workshop Vis Comput Biomed","raw_type":"Text"},{"id":"doi:10.2312/vcbm.20161266","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20161266","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:5370176","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.7699999809265137}],"awards":[{"id":"https://openalex.org/G145338696","display_name":null,"funder_award_id":"P41 GM103426","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W93479050","https://openalex.org/W1854590789","https://openalex.org/W1949393069","https://openalex.org/W1966406768","https://openalex.org/W1974035453","https://openalex.org/W1985342513","https://openalex.org/W2076452001","https://openalex.org/W2098519781","https://openalex.org/W2112905000","https://openalex.org/W2114566476","https://openalex.org/W2128852435","https://openalex.org/W2132706063","https://openalex.org/W2132938386","https://openalex.org/W2140504904","https://openalex.org/W2143867397","https://openalex.org/W2152013121","https://openalex.org/W2267499985","https://openalex.org/W2286332617","https://openalex.org/W2291468715"],"related_works":["https://openalex.org/W2365213443","https://openalex.org/W3013319096","https://openalex.org/W2993618308","https://openalex.org/W1549828508","https://openalex.org/W2373250155","https://openalex.org/W1964432573","https://openalex.org/W1493022169","https://openalex.org/W1563030733","https://openalex.org/W1549056443","https://openalex.org/W1607839343"],"abstract_inverted_index":{"Visualization":[0],"of":[1,20,31,116],"structural":[2,97,151,171],"biology":[3,172],"data":[4],"uses":[5],"color":[6,87,102,118,125,140],"to":[7,39,89,149],"categorize":[8],"or":[9,22,91],"separate":[10],"dense":[11],"structures":[12],"into":[13,131],"particular":[14,69,112],"semantic":[15],"units.":[16],"In":[17],"multiscale":[18],"models":[19],"viruses":[21],"bacteria,":[23],"there":[24],"are":[25,62,120],"atoms":[26],"on":[27,80,156],"the":[28,40,81,86,93,101,117,124,128,145],"finest":[29],"level":[30,42],"detail,":[32],"then":[33],"amino-acids,":[34],"secondary":[35],"structures,":[36],"macromolecules,":[37],"up":[38],"compartment":[41],"and,":[43],"in":[44,170],"all":[45],"these":[46],"levels,":[47],"elements":[48],"can":[49],"be":[50],"visually":[51],"distinguished":[52],"by":[53,165],"color.":[54],"However,":[55],"currently":[56,94],"only":[57],"single":[58],"scale":[59,70,83],"coloring":[60],"schemes":[61],"utilized":[63],"that":[64,107,144,153],"show":[65],"information":[66],"for":[67],"one":[68],"only.":[71],"We":[72,99],"present":[73],"a":[74,104,111,132],"novel":[75],"technology":[76],"which":[77],"adaptively,":[78],"based":[79],"current":[82],"level,":[84],"adjusts":[85],"scheme":[88,119,126],"depict":[90],"distinguish":[92,150],"best":[95],"visible":[96],"information.":[98],"treat":[100],"as":[103],"visual":[105],"resource":[106],"is":[108,147,154],"distributed":[109],"given":[110,133,158],"demand.":[113],"The":[114],"changes":[115],"seamlessly":[121],"interpolated":[122],"between":[123],"from":[127],"previous":[129],"views":[130],"new":[134],"one.":[135],"With":[136],"such":[137],"dynamic":[138],"multi-scale":[139],"mapping":[141],"we":[142],"ensure":[143],"viewer":[146],"able":[148],"detail":[152],"shown":[155],"any":[157],"scale.":[159],"This":[160],"technique":[161],"has":[162,174],"been":[163,175],"tested":[164],"users":[166],"with":[167],"an":[168],"expertise":[169],"and":[173],"overall":[176],"well":[177],"received.":[178]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
