{"id":"https://openalex.org/W2291468715","doi":"https://doi.org/10.2312/vcbm.20151209","title":"cellVIEW: a Tool for Illustrative and Multi-Scale Rendering of Large Biomolecular Datasets","display_name":"cellVIEW: a Tool for Illustrative and Multi-Scale Rendering of Large Biomolecular Datasets","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2291468715","doi":"https://doi.org/10.2312/vcbm.20151209","mag":"2291468715","pmid":"https://pubmed.ncbi.nlm.nih.gov/29291131"},"language":"en","primary_location":{"id":"pmid:29291131","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29291131","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Eurographics Workshop on Visual Computing for Biomedicine","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2312/vcbm.20151209","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016122563","display_name":"Mathieu Le Muzic","orcid":null},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Muzic, Mathieu Le","raw_affiliation_strings":["TU, Wien, Austria"],"affiliations":[{"raw_affiliation_string":"TU, Wien, Austria","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080082986","display_name":"Ludovic Autin","orcid":"https://orcid.org/0000-0002-2197-191X"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Autin, Ludovic","raw_affiliation_strings":["The Scripps Research Institute La Jolla California"],"affiliations":[{"raw_affiliation_string":"The Scripps Research Institute La Jolla California","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025345988","display_name":"J\u00falius Parulek","orcid":null},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Parulek, Julius","raw_affiliation_strings":["University of Bergen, Norway"],"affiliations":[{"raw_affiliation_string":"University of Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022294742","display_name":"Ivan Viola","orcid":"https://orcid.org/0000-0003-4248-6574"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Viola, Ivan","raw_affiliation_strings":["TU, Wien, Austria"],"affiliations":[{"raw_affiliation_string":"TU, Wien, Austria","institution_ids":["https://openalex.org/I145847075"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5016122563"],"corresponding_institution_ids":["https://openalex.org/I145847075"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":70,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2015","issue":null,"first_page":"61","last_page":"70"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9251999855041504,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9251999855041504,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9053000211715698,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9035000205039978,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.8049279451370239},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7917545437812805},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5615971088409424},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.4932846426963806},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.46041566133499146},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.40558117628097534},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.3542349338531494},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.31942877173423767},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11156439781188965}],"concepts":[{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.8049279451370239},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7917545437812805},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5615971088409424},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.4932846426963806},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.46041566133499146},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.40558117628097534},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.3542349338531494},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.31942877173423767},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11156439781188965}],"mesh":[],"locations_count":3,"locations":[{"id":"pmid:29291131","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29291131","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Eurographics Workshop on Visual Computing for Biomedicine","raw_type":null},{"id":"pmh:oai:europepmc.org:4656159","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5747374","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"doi:10.2312/vcbm.20151209","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20151209","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.2312/vcbm.20151209","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20151209","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W141466098","https://openalex.org/W160347429","https://openalex.org/W255996521","https://openalex.org/W1526205344","https://openalex.org/W1854590789","https://openalex.org/W1909665669","https://openalex.org/W1949393069","https://openalex.org/W1974035453","https://openalex.org/W1990633019","https://openalex.org/W1993040364","https://openalex.org/W1994982193","https://openalex.org/W2009139756","https://openalex.org/W2029667189","https://openalex.org/W2053919457","https://openalex.org/W2074718022","https://openalex.org/W2080993455","https://openalex.org/W2093301923","https://openalex.org/W2098519781","https://openalex.org/W2106612397","https://openalex.org/W2109041166","https://openalex.org/W2110457937","https://openalex.org/W2120238752","https://openalex.org/W2132629607","https://openalex.org/W2148999145","https://openalex.org/W2152013121","https://openalex.org/W2300039771","https://openalex.org/W2491091343"],"related_works":["https://openalex.org/W2038816222","https://openalex.org/W2587621406","https://openalex.org/W4200328636","https://openalex.org/W2145406296","https://openalex.org/W2018151443","https://openalex.org/W568485512","https://openalex.org/W2471409651","https://openalex.org/W2081654492","https://openalex.org/W4213119407","https://openalex.org/W1824574786"],"abstract_inverted_index":{"In":[0],"this":[1],"article":[2],"we":[3,79,125],"introduce":[4],"cellVIEW,":[5],"a":[6,81,153,161],"new":[7],"system":[8,49],"to":[9,28,36,53,130,158,165,171,178,205],"interactively":[10,39],"visualize":[11,40],"large":[12,67,194],"biomolecular":[13],"datasets":[14,65,100],"on":[15,64,139,160,197],"the":[16,30,74,89,132,140,179,186,198],"atomic":[17,199],"level.":[18],"Our":[19],"tool":[20,147],"is":[21,86,101,143,185,202],"unique":[22],"and":[23,38,69,91,170,201,207],"has":[24,148],"been":[25,149],"specifically":[26],"designed":[27],"match":[29],"ambitions":[31],"of":[32,43,59,76,98,104,118,135,193],"our":[33,99,127,146,182],"domain":[34],"experts":[35],"model":[37],"structures":[41],"comprised":[42],"several":[44],"billions":[45],"atom.":[46],"The":[47,95],"cellVIEW":[48,184],"integrates":[50],"acceleration":[51],"techniques":[52,175],"allow":[54],"for":[55,190],"real-time":[56],"graphics":[57,174],"performance":[58],"60":[60],"Hz":[61],"display":[62],"rate":[63],"representing":[66],"viruses":[68],"bacterial":[70],"organisms.":[71],"Inspired":[72],"by":[73],"work":[75],"scientific":[77],"illustrators,":[78],"propose":[80],"level-of-detail":[82],"scheme":[83],"which":[84,113],"purpose":[85],"two-fold:":[87],"accelerating":[88],"rendering":[90,128],"reducing":[92],"visual":[93],"clutter.":[94],"main":[96],"part":[97],"made":[102],"out":[103],"macromolecules,":[105],"but":[106],"it":[107],"also":[108],"comprises":[109],"nucleic":[110],"acids":[111],"strands":[112,137],"are":[114],"stored":[115],"as":[116],"sets":[117],"control":[119],"points.":[120],"For":[121],"that":[122,145],"specific":[123],"case,":[124],"extend":[126],"method":[129],"support":[131],"dynamic":[133],"generation":[134],"DNA":[136],"directly":[138,150],"GPU.":[141],"It":[142],"noteworthy":[144],"implemented":[151],"inside":[152],"game":[154],"engine.":[155],"We":[156],"chose":[157],"rely":[159],"third":[162],"party":[163],"engine":[164],"reduce":[166],"software":[167],"development":[168],"work-load":[169],"make":[172],"bleeding-edge":[173],"more":[176],"accessible":[177],"end-users.":[180],"To":[181],"knowledge":[183],"only":[187],"suitable":[188],"solution":[189],"interactive":[191],"visualization":[192],"bimolecular":[195],"landscapes":[196],"level":[200],"freely":[203],"available":[204],"use":[206],"extend.":[208]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":6}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
