{"id":"https://openalex.org/W2262883342","doi":"https://doi.org/10.2312/vcbm.20151208","title":"Instant Visualization of Secondary Structures of Molecular Models","display_name":"Instant Visualization of Secondary Structures of Molecular Models","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2262883342","doi":"https://doi.org/10.2312/vcbm.20151208","mag":"2262883342"},"language":"en","primary_location":{"id":"pmh:oai:www.recercat.cat:2072/294379","is_oa":true,"landing_page_url":"http://hdl.handle.net/2117/85351","pdf_url":"http://hdl.handle.net/2117/85351","source":{"id":"https://openalex.org/S4306402147","display_name":"RECERCAT (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/submittedVersion"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/2117/85351","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088394147","display_name":"Pedro Hermosilla","orcid":"https://orcid.org/0000-0003-3586-4741"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Hermosilla, Pedro","raw_affiliation_strings":["Universitat Polit\u00e8cnica de Catalunya (Spain) and Barcelona Supercomputing Center (Spain)"],"affiliations":[{"raw_affiliation_string":"Universitat Polit\u00e8cnica de Catalunya (Spain) and Barcelona Supercomputing Center (Spain)","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060698638","display_name":"V\u0131\u0301ctor Guallar","orcid":"https://orcid.org/0000-0002-4580-1114"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Guallar, V.","raw_affiliation_strings":["Barcelona Supercomputing Center, Spain"],"affiliations":[{"raw_affiliation_string":"Barcelona Supercomputing Center, Spain","institution_ids":["https://openalex.org/I9617848","https://openalex.org/I2799803557"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013055435","display_name":"\u00c0lvar Vinacua","orcid":"https://orcid.org/0000-0001-8984-4311"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Vinacua, Alvar","raw_affiliation_strings":["Universitat Polit\u00e8cnica de Catalunya,  Spain"],"affiliations":[{"raw_affiliation_string":"Universitat Polit\u00e8cnica de Catalunya,  Spain","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002141920","display_name":"Pere\u2010Pau V\u00e1zquez","orcid":"https://orcid.org/0000-0003-4638-4065"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"V\u00e1zquez, Pere-Pau","raw_affiliation_strings":["Universitat Polit\u00e8cnica de Catalunya,  Spain"],"affiliations":[{"raw_affiliation_string":"Universitat Polit\u00e8cnica de Catalunya,  Spain","institution_ids":["https://openalex.org/I9617848"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5088394147"],"corresponding_institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10481","display_name":"Computer Graphics and Visualization Techniques","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1704","display_name":"Computer Graphics and Computer-Aided Design"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10481","display_name":"Computer Graphics and Visualization Techniques","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1704","display_name":"Computer Graphics and Computer-Aided Design"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9746000170707703,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.9653000235557556,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/precomputation","display_name":"Precomputation","score":0.9340554475784302},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7761227488517761},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5908930897712708},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5068164467811584},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4814000129699707},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47803932428359985},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.46918320655822754},{"id":"https://openalex.org/keywords/shader","display_name":"Shader","score":0.4574848711490631},{"id":"https://openalex.org/keywords/tessellation","display_name":"Tessellation (computer graphics)","score":0.45569151639938354},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.44081974029541016},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.4359927475452423},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2874520719051361},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.2613797187805176},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21499675512313843},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.12030684947967529},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.10893005132675171},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.09749582409858704}],"concepts":[{"id":"https://openalex.org/C159379195","wikidata":"https://www.wikidata.org/wiki/Q7239568","display_name":"Precomputation","level":3,"score":0.9340554475784302},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7761227488517761},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5908930897712708},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5068164467811584},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4814000129699707},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47803932428359985},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.46918320655822754},{"id":"https://openalex.org/C177681979","wikidata":"https://www.wikidata.org/wiki/Q633182","display_name":"Shader","level":3,"score":0.4574848711490631},{"id":"https://openalex.org/C43817857","wikidata":"https://www.wikidata.org/wiki/Q9357547","display_name":"Tessellation (computer graphics)","level":2,"score":0.45569151639938354},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.44081974029541016},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.4359927475452423},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2874520719051361},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.2613797187805176},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21499675512313843},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.12030684947967529},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.10893005132675171},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.09749582409858704},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:www.recercat.cat:2072/294379","is_oa":true,"landing_page_url":"http://hdl.handle.net/2117/85351","pdf_url":"http://hdl.handle.net/2117/85351","source":{"id":"https://openalex.org/S4306402147","display_name":"RECERCAT (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/submittedVersion"},{"id":"doi:10.2312/vcbm.20151208","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm.20151208","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:www.recercat.cat:2072/294379","is_oa":true,"landing_page_url":"http://hdl.handle.net/2117/85351","pdf_url":"http://hdl.handle.net/2117/85351","source":{"id":"https://openalex.org/S4306402147","display_name":"RECERCAT (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/submittedVersion"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6700000166893005}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2262883342.pdf"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1504806749","https://openalex.org/W1529159576","https://openalex.org/W1590507653","https://openalex.org/W1907619767","https://openalex.org/W1963821710","https://openalex.org/W1969954768","https://openalex.org/W1993040364","https://openalex.org/W2012879549","https://openalex.org/W2029428843","https://openalex.org/W2029667189","https://openalex.org/W2029704386","https://openalex.org/W2056901100","https://openalex.org/W2071883589","https://openalex.org/W2074066424","https://openalex.org/W2101627777","https://openalex.org/W2104290891","https://openalex.org/W2107792420","https://openalex.org/W2113403117","https://openalex.org/W2120568174","https://openalex.org/W2154069299","https://openalex.org/W2196152712","https://openalex.org/W2267499985","https://openalex.org/W2300039771"],"related_works":["https://openalex.org/W1977115694","https://openalex.org/W1980850342","https://openalex.org/W2107792420","https://openalex.org/W2072207934","https://openalex.org/W2263579231","https://openalex.org/W2131433745","https://openalex.org/W1613004264","https://openalex.org/W1992753683","https://openalex.org/W1996388339","https://openalex.org/W1969449584","https://openalex.org/W1725088683","https://openalex.org/W2277293695","https://openalex.org/W2211146980","https://openalex.org/W1582950752","https://openalex.org/W2366488278","https://openalex.org/W2556988732","https://openalex.org/W2093248715","https://openalex.org/W2133200801","https://openalex.org/W2156031376","https://openalex.org/W1531003194"],"abstract_inverted_index":{"Molecular":[0],"Dynamics":[1],"simulations":[2],"are":[3],"of":[4,26,33,36,50,56,87],"key":[5],"importance":[6],"in":[7,54,83],"the":[8,24,28,34,37,88],"drug":[9],"design":[10],"field.":[11],"Among":[12],"all":[13,49],"possible":[14],"representations":[15],"commonly":[16],"used":[17],"to":[18,46],"inspect":[19],"these":[20],"simulations,":[21],"Ribbons":[22],"has":[23],"advantage":[25,86],"giving":[27],"expert":[29],"a":[30,76,94],"good":[31],"overview":[32],"conformation":[35],"molecule.":[38],"Although":[39],"several":[40],"techniques":[41],"have":[42,52],"been":[43],"previously":[44],"proposed":[45],"render":[47],"ribbons,":[48],"them":[51,62],"limitations":[53],"terms":[55],"space":[57],"or":[58],"calculation":[59],"time,":[60],"making":[61],"not":[63],"suitable":[64],"for":[65],"real-time":[66],"interaction":[67],"with":[68],"simulation":[69],"software.":[70],"In":[71],"this":[72],"paper":[73],"we":[74],"present":[75],"novel":[77],"adaptive":[78],"method":[79,96],"that":[80,97,102],"generates":[81,103],"ribbons":[82],"real-time,":[84],"taking":[85],"tessellation":[89],"shader.":[90],"The":[91],"result":[92],"is":[93],"fast":[95],"requires":[98],"no":[99],"precomputation,":[100],"and":[101,107],"high":[104],"quality":[105],"shapes":[106],"shading.":[108]},"counts_by_year":[{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}