{"id":"https://openalex.org/W2125748785","doi":"https://doi.org/10.2312/vcbm/vcbm08/135-142","title":"Visual Analysis of Bipartite Biological Networks","display_name":"Visual Analysis of Bipartite Biological Networks","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W2125748785","doi":"https://doi.org/10.2312/vcbm/vcbm08/135-142","mag":"2125748785"},"language":"en","primary_location":{"id":"pmh:oai:HAL:hal-00656214v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-00656214","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Eurographics Workshop on Visual Computing for Biomedicine, Oct 2008, Delft, Netherlands. ⟨10.2312/VCBM/VCBM08/135-142⟩","raw_type":"Conference papers"},"type":"preprint","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://inria.hal.science/hal-00656214","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088255721","display_name":"Hans\u2010J\u00f6rg Schulz","orcid":"https://orcid.org/0000-0001-9974-535X"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Schulz, Hans-J\u00f6rg","raw_affiliation_strings":["University of Rostock,Germany"],"affiliations":[{"raw_affiliation_string":"University of Rostock,Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103430021","display_name":"Mathias John","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"John, Mathias","raw_affiliation_strings":["University of Rostock,Germany"],"affiliations":[{"raw_affiliation_string":"University of Rostock,Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028265195","display_name":"Andrea Unger","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Unger, Andrea","raw_affiliation_strings":["University of Rostock,Germany"],"affiliations":[{"raw_affiliation_string":"University of Rostock,Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039180428","display_name":"Heidrun Schumann","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Schumann, Heidrun","raw_affiliation_strings":["University of Rostock,Germany"],"affiliations":[{"raw_affiliation_string":"University of Rostock,Germany","institution_ids":["https://openalex.org/I4665924"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5088255721"],"corresponding_institution_ids":["https://openalex.org/I4665924"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7889983654022217},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7788410782814026},{"id":"https://openalex.org/keywords/bipartite-graph","display_name":"Bipartite graph","score":0.7688030004501343},{"id":"https://openalex.org/keywords/graph-drawing","display_name":"Graph drawing","score":0.7309186458587646},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5886563658714294},{"id":"https://openalex.org/keywords/hyperlink","display_name":"Hyperlink","score":0.5343462824821472},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.525407075881958},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.4875451922416687},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.47241321206092834},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4553960859775543},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4508133828639984},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.44220834970474243},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.3765861988067627},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34652596712112427},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3373779058456421},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21076169610023499},{"id":"https://openalex.org/keywords/web-page","display_name":"Web page","score":0.17480778694152832},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.10001200437545776}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7889983654022217},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7788410782814026},{"id":"https://openalex.org/C197657726","wikidata":"https://www.wikidata.org/wiki/Q174733","display_name":"Bipartite graph","level":3,"score":0.7688030004501343},{"id":"https://openalex.org/C112953755","wikidata":"https://www.wikidata.org/wiki/Q739462","display_name":"Graph drawing","level":3,"score":0.7309186458587646},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5886563658714294},{"id":"https://openalex.org/C30088001","wikidata":"https://www.wikidata.org/wiki/Q102014","display_name":"Hyperlink","level":3,"score":0.5343462824821472},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.525407075881958},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.4875451922416687},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.47241321206092834},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4553960859775543},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4508133828639984},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.44220834970474243},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.3765861988067627},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34652596712112427},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3373779058456421},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21076169610023499},{"id":"https://openalex.org/C21959979","wikidata":"https://www.wikidata.org/wiki/Q36774","display_name":"Web page","level":2,"score":0.17480778694152832},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.10001200437545776},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:HAL:hal-00656214v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-00656214","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Eurographics Workshop on Visual Computing for Biomedicine, Oct 2008, Delft, Netherlands. ⟨10.2312/VCBM/VCBM08/135-142⟩","raw_type":"Conference papers"},{"id":"pmh:oai:pure.atira.dk:publications/7dfea7a1-5d26-41e5-b089-f36b7f95ad8f","is_oa":false,"landing_page_url":"https://pure.au.dk/portal/en/publications/7dfea7a1-5d26-41e5-b089-f36b7f95ad8f","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Schulz, H-J, John, M, Unger, A & Schumann, H 2008, Visual Analysis of Bipartite Biological Networks. in C P Botha, G Kindlmann, W Niessen & B Preim (eds), Proceedings of the Eurographics Workshop on Visual Computing for Biomedicine VCBM 2008. Eurographics Association, Delft, The Netherlands, pp. 135-142. https://doi.org/10.2312/VCBM/VCBM08/135-142","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.2312/vcbm/vcbm08/135-142","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm/vcbm08/135-142","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-00656214v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-00656214","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Eurographics Workshop on Visual Computing for Biomedicine, Oct 2008, Delft, Netherlands. ⟨10.2312/VCBM/VCBM08/135-142⟩","raw_type":"Conference papers"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.5}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1486079222","https://openalex.org/W1492040047","https://openalex.org/W1544318401","https://openalex.org/W1596018907","https://openalex.org/W1601764037","https://openalex.org/W1781211963","https://openalex.org/W2050427657","https://openalex.org/W2052483969","https://openalex.org/W2053761479","https://openalex.org/W2099281231","https://openalex.org/W2100609577","https://openalex.org/W2103017472","https://openalex.org/W2104108767","https://openalex.org/W2129755233","https://openalex.org/W2131898753","https://openalex.org/W2146384526","https://openalex.org/W2159521238","https://openalex.org/W2161581092","https://openalex.org/W2163449287","https://openalex.org/W2169700383","https://openalex.org/W2400274655","https://openalex.org/W2969854828"],"related_works":["https://openalex.org/W1982442837","https://openalex.org/W2070704205","https://openalex.org/W1910225681","https://openalex.org/W2111288686","https://openalex.org/W2353485001","https://openalex.org/W2171298469","https://openalex.org/W2098027521","https://openalex.org/W2578454336","https://openalex.org/W2296932537","https://openalex.org/W4214598766"],"abstract_inverted_index":{"In":[0],"life":[1,38],"sciences,":[2,39],"the":[3,16,31,37,43,55,113,128,140,156],"importance":[4],"of":[5,18,34,96],"complex":[6,105],"network":[7,45,49,106,115],"visualization":[8,17,142],"is":[9,78,146],"ever":[10],"increasing.":[11],"Yet,":[12],"existing":[13],"approaches":[14],"for":[15,58,134],"networks":[19,60,71,91],"are":[20,25,52,61,69],"general":[21],"purpose":[22],"techniques":[23],"that":[24,51,124],"often":[26],"not":[27],"suited":[28],"to":[29,41,87,100],"support":[30],"specific":[32,48],"needs":[33],"researchers":[35],"in":[36,54,81],"or":[40],"handle":[42],"large":[44,89],"sizes":[46],"and":[47,64,98,108,143,149],"characteristics":[50],"prevalent":[53],"field.":[56],"Examples":[57],"such":[59],"biomedical":[62],"ontologies":[63],"biochemical":[65],"reaction":[66],"networks,":[67],"which":[68,77,138],"bipartite":[70,90,136],"\u0096":[72],"a":[73,94,119],"particular":[74],"graph":[75],"class":[76],"rarely":[79],"addressed":[80],"visualization.":[82],"Our":[83],"table-based":[84],"approach":[85],"allows":[86],"visualize":[88],"alongside":[92],"with":[93,127],"multitude":[95],"attributes":[97],"hyperlinks":[99],"biological":[101],"databases.":[102],"To":[103],"explore":[104],"motifs":[107],"perform":[109],"intricate":[110],"selections":[111],"within":[112],"visualized":[114],"data,":[116],"we":[117],"introduce":[118],"new":[120],"script-based":[121],"brushing":[122],"mechanism":[123],"integrates":[125],"naturally":[126],"interlinked,":[129],"tabular":[130],"representation.":[131],"A":[132],"prototype":[133],"exploring":[135],"graphs,":[137],"uses":[139],"proposed":[141],"interaction":[144],"techniques,":[145],"also":[147],"presented":[148],"used":[150],"on":[151],"real":[152],"data":[153],"sets":[154],"from":[155],"application":[157],"domain.":[158]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-13T16:22:10.518609","created_date":"2025-10-10T00:00:00"}