{"id":"https://openalex.org/W2111163729","doi":"https://doi.org/10.2312/vcbm/vcbm08/045-051","title":"Computation of More Channels in Protein Molecules","display_name":"Computation of More Channels in Protein Molecules","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W2111163729","doi":"https://doi.org/10.2312/vcbm/vcbm08/045-051","mag":"2111163729"},"language":"en","primary_location":{"id":"doi:10.2312/vcbm/vcbm08/045-051","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm/vcbm08/045-051","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"type":"other","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2312/vcbm/vcbm08/045-051","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040392681","display_name":"Petr Bene\u0161","orcid":"https://orcid.org/0000-0002-8297-9675"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Bene\u009a, Petr","raw_affiliation_strings":["Faculty of Informatics, Masaryk University, Czech Republic#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Informatics, Masaryk University, Czech Republic#TAB#","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076479706","display_name":"Petr Medek","orcid":null},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Medek, Petr","raw_affiliation_strings":["Faculty of Informatics, Masaryk University, Czech Republic#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Informatics, Masaryk University, Czech Republic#TAB#","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003565623","display_name":"Ji\u0159\u00ed\u00ad Sochor","orcid":"https://orcid.org/0000-0001-7823-1544"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Sochor, Jiri","raw_affiliation_strings":["Faculty of Informatics, Masaryk University, Czech Republic#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Informatics, Masaryk University, Czech Republic#TAB#","institution_ids":["https://openalex.org/I21449261"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I21449261"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"45","last_page":"51"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.8097532987594604},{"id":"https://openalex.org/keywords/channel","display_name":"Channel (broadcasting)","score":0.7006116509437561},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6961836814880371},{"id":"https://openalex.org/keywords/ideal","display_name":"Ideal (ethics)","score":0.6050465106964111},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4572145938873291},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.386457234621048},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.08482706546783447}],"concepts":[{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.8097532987594604},{"id":"https://openalex.org/C127162648","wikidata":"https://www.wikidata.org/wiki/Q16858953","display_name":"Channel (broadcasting)","level":2,"score":0.7006116509437561},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6961836814880371},{"id":"https://openalex.org/C2776639384","wikidata":"https://www.wikidata.org/wiki/Q840396","display_name":"Ideal (ethics)","level":2,"score":0.6050465106964111},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4572145938873291},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.386457234621048},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.08482706546783447},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.2312/vcbm/vcbm08/045-051","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm/vcbm08/045-051","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null},{"id":"mag:2111163729","is_oa":false,"landing_page_url":"https://diglib.eg.org/handle/10.2312/VCBM.VCBM08.045-051","pdf_url":null,"source":{"id":"https://openalex.org/S4306421155","display_name":"Visual Computing for Biomedicine","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Visual Computing for Biomedicine","raw_type":null}],"best_oa_location":{"id":"doi:10.2312/vcbm/vcbm08/045-051","is_oa":true,"landing_page_url":"https://doi.org/10.2312/vcbm/vcbm08/045-051","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1517566065","https://openalex.org/W1967171006","https://openalex.org/W1974635207","https://openalex.org/W2039181331","https://openalex.org/W2078290150","https://openalex.org/W2105902442","https://openalex.org/W2128402268","https://openalex.org/W2131080603","https://openalex.org/W2153504150","https://openalex.org/W2169528473","https://openalex.org/W2234920829","https://openalex.org/W2376883917","https://openalex.org/W3041834803"],"related_works":["https://openalex.org/W1987619816","https://openalex.org/W1752587127","https://openalex.org/W3116323439","https://openalex.org/W2293279344","https://openalex.org/W2520967483","https://openalex.org/W2806781084","https://openalex.org/W2100972559","https://openalex.org/W2391891453","https://openalex.org/W2524951041","https://openalex.org/W2135450800","https://openalex.org/W2400589251","https://openalex.org/W2156750387","https://openalex.org/W2134125092","https://openalex.org/W2085602712","https://openalex.org/W2543617686","https://openalex.org/W2405035126","https://openalex.org/W2559332747","https://openalex.org/W3208933537","https://openalex.org/W2184423028","https://openalex.org/W2058521266"],"abstract_inverted_index":{"In":[0,58],"the":[1,106],"process":[2],"of":[3,13,41,69,111],"designing":[4],"drugs":[5],"it":[6],"is":[7,75,98],"crucial":[8],"to":[9],"perform":[10],"various":[11],"analyses":[12],"cavities":[14],"and":[15,81,113],"channels":[16,86],"in":[17,31,49],"protein":[18,34],"molecules.":[19],"Chemists":[20],"also":[21],"require":[22],"that":[23,95],"more":[24,42,70],"than":[25,43],"one":[26],"ideal":[27],"channel":[28,46],"be":[29],"computed":[30],"a":[32,44,63,78,99],"static":[33],"molecule.":[35],"Three":[36],"basic":[37],"approaches":[38,54],"for":[39,67],"computation":[40,68],"single":[45],"were":[47],"introduced":[48],"recent":[50],"publications.":[51],"However,":[52],"these":[53],"have":[55],"several":[56],"disadvantages.":[57],"this":[59,96],"paper":[60],"we":[61],"propose":[62],"new":[64,73],"adaptive":[65],"method":[66,74,97,107],"channels.":[71,116],"This":[72],"piloted":[76],"on":[77],"real":[79],"data":[80],"results":[82],"are":[83],"compared":[84],"with":[85],"identified":[87],"by":[88],"chemists":[89],"as":[90,105],"relevant.":[91],"The":[92],"comparison":[93],"indicates":[94],"significant":[100],"improvement":[101],"over":[102],"previous":[103],"methods,":[104],"computes":[108],"less":[109],"number":[110],"similar":[112],"biochemically":[114],"insignificant":[115]},"counts_by_year":[],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
