{"id":"https://openalex.org/W2144303871","doi":"https://doi.org/10.2312/sgp/sgp03/166-176","title":"A Geometric Database for Gene Expression Data","display_name":"A Geometric Database for Gene Expression Data","publication_year":2003,"publication_date":"2003-01-01","ids":{"openalex":"https://openalex.org/W2144303871","doi":"https://doi.org/10.2312/sgp/sgp03/166-176","mag":"2144303871","pmid":"https://pubmed.ncbi.nlm.nih.gov/20631855"},"language":"en","primary_location":{"id":"pmid:20631855","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20631855","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symposium on geometry processing : [proceedings]. Symposium on Geometry Processing","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":null,"any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101952408","display_name":"Tao Ju","orcid":"https://orcid.org/0000-0002-1848-1012"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ju, Tao","raw_affiliation_strings":["[Rice Univ., Houston]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"[Rice Univ., Houston]","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113597103","display_name":"Joe Warren","orcid":null},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Warren, Joe","raw_affiliation_strings":["[Rice Univ., Houston]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"[Rice Univ., Houston]","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076574682","display_name":"Gregor Eichele","orcid":"https://orcid.org/0000-0002-2863-9127"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eichele, Gregor","raw_affiliation_strings":["Baylor College of Medicine, Houston"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Baylor College of Medicine, Houston","institution_ids":["https://openalex.org/I181547552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065950432","display_name":"Christina Thaller","orcid":null},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thaller, Christina","raw_affiliation_strings":["Baylor College of Medicine, Houston"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Baylor College of Medicine, Houston","institution_ids":["https://openalex.org/I181547552"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049689333","display_name":"Wah Chiu","orcid":"https://orcid.org/0000-0002-8910-3078"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chiu, Wah","raw_affiliation_strings":["Baylor College of Medicine, Houston"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Baylor College of Medicine, Houston","institution_ids":["https://openalex.org/I181547552"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078550956","display_name":"James P. Carson","orcid":"https://orcid.org/0000-0001-9009-5645"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carson, James","raw_affiliation_strings":["Baylor College of Medicine, Houston"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Baylor College of Medicine, Houston","institution_ids":["https://openalex.org/I181547552"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":42,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2003","issue":null,"first_page":"166","last_page":"176"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11245","display_name":"Advanced Numerical Analysis Techniques","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11245","display_name":"Advanced Numerical Analysis Techniques","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10719","display_name":"3D Shape Modeling and Analysis","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10996","display_name":"Computational Geometry and Mesh Generation","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1704","display_name":"Computer Graphics and Computer-Aided Design"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subdivision","display_name":"Subdivision","score":0.7947806715965271},{"id":"https://openalex.org/keywords/subdivision-surface","display_name":"Subdivision surface","score":0.6392215490341187},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6178306341171265},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5584144592285156},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.523910641670227},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.48925018310546875},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4702132046222687},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.46126797795295715},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.44199898838996887},{"id":"https://openalex.org/keywords/brain-atlas","display_name":"Brain atlas","score":0.43623384833335876},{"id":"https://openalex.org/keywords/spline","display_name":"Spline (mechanical)","score":0.4346131384372711},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33470624685287476},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2936568260192871},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.22883501648902893},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2031414806842804},{"id":"https://openalex.org/keywords/polygon-mesh","display_name":"Polygon mesh","score":0.14755025506019592},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.11417198181152344},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.08830922842025757}],"concepts":[{"id":"https://openalex.org/C143392562","wikidata":"https://www.wikidata.org/wiki/Q449111","display_name":"Subdivision","level":2,"score":0.7947806715965271},{"id":"https://openalex.org/C199686383","wikidata":"https://www.wikidata.org/wiki/Q1529124","display_name":"Subdivision surface","level":3,"score":0.6392215490341187},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6178306341171265},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5584144592285156},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.523910641670227},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.48925018310546875},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4702132046222687},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.46126797795295715},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.44199898838996887},{"id":"https://openalex.org/C2780972224","wikidata":"https://www.wikidata.org/wiki/Q17047956","display_name":"Brain atlas","level":2,"score":0.43623384833335876},{"id":"https://openalex.org/C10390562","wikidata":"https://www.wikidata.org/wiki/Q581809","display_name":"Spline (mechanical)","level":2,"score":0.4346131384372711},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33470624685287476},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2936568260192871},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.22883501648902893},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2031414806842804},{"id":"https://openalex.org/C31487907","wikidata":"https://www.wikidata.org/wiki/Q1154597","display_name":"Polygon mesh","level":2,"score":0.14755025506019592},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.11417198181152344},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.08830922842025757},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"pmid:20631855","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20631855","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Symposium on geometry processing : [proceedings]. Symposium on Geometry Processing","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.4.2603","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.4.2603","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.rice.edu/~jwarren/papers/deform_paper_final.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2903551","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symp Geom Process","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2903551","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2903551","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symp Geom Process","raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_1569860","is_oa":false,"landing_page_url":"https://hdl.handle.net/11858/00-001M-0000-0010-24E7-1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings of the 2003 Eurographics/ACM SIGGRAPH symposium on Geometry processing","raw_type":"info:eu-repo/semantics/bookPart"},{"id":"doi:10.2312/sgp/sgp03/166-176","is_oa":true,"landing_page_url":"https://doi.org/10.2312/sgp/sgp03/166-176","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:2903551","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Symp Geom Process","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W49633843","https://openalex.org/W789698348","https://openalex.org/W1494985239","https://openalex.org/W1528814089","https://openalex.org/W1539921579","https://openalex.org/W1969944427","https://openalex.org/W2016833994","https://openalex.org/W2032325716","https://openalex.org/W2049981393","https://openalex.org/W2068907906","https://openalex.org/W2072693842","https://openalex.org/W2077127806","https://openalex.org/W2086921140","https://openalex.org/W2096619076","https://openalex.org/W2098979973","https://openalex.org/W2099290282","https://openalex.org/W2104095591","https://openalex.org/W2118891573","https://openalex.org/W2134756023","https://openalex.org/W2143736779","https://openalex.org/W2148694408","https://openalex.org/W2159473313","https://openalex.org/W3161976867","https://openalex.org/W3211330693"],"related_works":["https://openalex.org/W2016833994","https://openalex.org/W2015475217","https://openalex.org/W1528814089","https://openalex.org/W2128409098","https://openalex.org/W2059017188","https://openalex.org/W2151139811","https://openalex.org/W2128649708","https://openalex.org/W1976731160","https://openalex.org/W2046911213","https://openalex.org/W2032325716","https://openalex.org/W1985901090","https://openalex.org/W2105490800","https://openalex.org/W2053275091","https://openalex.org/W2012876210","https://openalex.org/W2155982530","https://openalex.org/W2136997553","https://openalex.org/W2134908043","https://openalex.org/W2103071307","https://openalex.org/W2034432063","https://openalex.org/W2158005331"],"abstract_inverted_index":{"As":[0],"the":[1,7,21,25,35,50,57,65,72,98,132,156,176,180],"logical":[2],"next":[3],"step":[4],"after":[5],"sequencing":[6],"mouse":[8,26,36,58,73,99],"genome,":[9],"biologists":[10,38,77],"have":[11],"developed":[12,143],"laboratory":[13],"methods":[14,33],"for":[15,53,71,144],"rapidly":[16],"determining":[17],"where":[18],"each":[19,54,139],"of":[20,44,67,89,121,155,179],"30K":[22],"genes":[23,166],"in":[24,56],"genome":[27],"is":[28,92,107],"synthesizing":[29],"protein.":[30],"Applying":[31],"these":[32,184],"to":[34,78,131,148,152,170,186],"brain,":[37],"are":[39,129],"currently":[40],"generating":[41],"large":[42],"numbers":[43],"2D":[45],"cross-sectional":[46],"images":[47,128],"that":[48,75,95],"record":[49],"expression":[51,84,127,162],"pattern":[52],"gene":[55,83,126],"genome.":[59],"In":[60],"this":[61,82,90,136,153],"paper,":[62],"we":[63],"describe":[64],"structure":[66,178],"a":[68,110,119],"geometric":[69],"database":[70,91,133],"brain":[74,100],"allows":[76,183],"organize":[79],"and":[80],"search":[81],"data.":[85,150],"The":[86],"central":[87],"component":[88],"an":[93],"atlas":[94,106,137],"explicitly":[96],"partitions":[97],"into":[101],"key":[102],"anatomical":[103,115,171],"regions.":[104],"This":[105],"represented":[108],"as":[109],"Catmull-Clark":[111],"subdivision":[112,146,157,181],"mesh":[113,182],"with":[114],"regions":[116,172],"separated":[117],"by":[118,134],"network":[120],"B-spline":[122],"crease":[123],"curves.":[124],"New":[125],"added":[130],"deforming":[135],"onto":[138],"image":[140],"using":[141],"techniques":[142],"fitting":[145],"surfaces":[147],"scatter":[149],"Due":[151],"partitioning":[154],"mesh,":[158],"user":[159],"queries":[160,185],"comparing":[161],"data":[163],"between":[164],"various":[165],"can":[167],"be":[168,187],"restricted":[169],"without":[173],"difficulty":[174],"while":[175],"multi-resolution":[177],"processed":[188],"efficiently.":[189]},"counts_by_year":[{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
