{"id":"https://openalex.org/W2942707551","doi":"https://doi.org/10.2312/molva.20181102","title":"VIA-MD: Visual Interactive Analysis of Molecular Dynamics","display_name":"VIA-MD: Visual Interactive Analysis of Molecular Dynamics","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2942707551","doi":"https://doi.org/10.2312/molva.20181102","mag":"2942707551"},"language":"en","primary_location":{"id":"doi:10.2312/molva.20181102","is_oa":true,"landing_page_url":"https://doi.org/10.2312/molva.20181102","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"type":"other","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2312/molva.20181102","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012530562","display_name":"Robin Sk\u00e5nberg","orcid":"https://orcid.org/0000-0001-7447-483X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sk\u00e5nberg, Robin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014428406","display_name":"Mathieu Linares","orcid":"https://orcid.org/0000-0002-9720-5429"},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Linares, Mathieu","raw_affiliation_strings":["Link\u00f6ping University, Link\u00f6ping, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Link\u00f6ping University, Link\u00f6ping, Sweden","institution_ids":["https://openalex.org/I102134673"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019979427","display_name":"Carolin K\u00f6nig","orcid":"https://orcid.org/0000-0001-8931-4337"},"institutions":[{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"K\u00f6nig, Carolin","raw_affiliation_strings":["KTH Royal Institute of Technology, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KTH Royal Institute of Technology, Stockholm, Sweden","institution_ids":["https://openalex.org/I86987016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034879764","display_name":"Patrick Norman","orcid":"https://orcid.org/0000-0002-1191-4954"},"institutions":[{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Norman, Patrick","raw_affiliation_strings":["KTH Royal Institute of Technology, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KTH Royal Institute of Technology, Stockholm, Sweden","institution_ids":["https://openalex.org/I86987016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072687280","display_name":"Daniel J\u00f6nsson","orcid":"https://orcid.org/0000-0002-5220-633X"},"institutions":[{"id":"https://openalex.org/I183111857","display_name":"Malm\u00f6 University","ror":"https://ror.org/05wp7an13","country_code":"SE","type":"education","lineage":["https://openalex.org/I183111857"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"J\u00f6nsson, Daniel","raw_affiliation_strings":["Malm\u00f6 University, Malmo, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Malm\u00f6 University, Malmo, Sweden","institution_ids":["https://openalex.org/I183111857"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040236693","display_name":"Ingrid Hotz","orcid":"https://orcid.org/0000-0001-7285-0483"},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Hotz, Ingrid","raw_affiliation_strings":["Link\u00f6ping University, Link\u00f6ping, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Link\u00f6ping University, Link\u00f6ping, Sweden","institution_ids":["https://openalex.org/I102134673"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048647256","display_name":"Anders Ynnerman","orcid":"https://orcid.org/0000-0002-9466-9826"},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Ynnerman, Anders","raw_affiliation_strings":["Link\u00f6ping University, Link\u00f6ping, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Link\u00f6ping University, Link\u00f6ping, Sweden","institution_ids":["https://openalex.org/I102134673"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"19","last_page":"27"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9585999846458435,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9585999846458435,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6310908794403076},{"id":"https://openalex.org/keywords/interactive-visual-analysis","display_name":"Interactive visual analysis","score":0.5218002796173096},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.5119932293891907},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.40063852071762085},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.38622885942459106},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3552294969558716},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2703106999397278}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6310908794403076},{"id":"https://openalex.org/C99740376","wikidata":"https://www.wikidata.org/wiki/Q17092520","display_name":"Interactive visual analysis","level":4,"score":0.5218002796173096},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.5119932293891907},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.40063852071762085},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.38622885942459106},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3552294969558716},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2703106999397278}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.2312/molva.20181102","is_oa":true,"landing_page_url":"https://doi.org/10.2312/molva.20181102","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null},{"id":"mag:2942707551","is_oa":false,"landing_page_url":"https://dblp.uni-trier.de/db/conf/molva-ws/molva-ws2018.html#SkanbergLKNJHY18","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Eurographics","raw_type":null}],"best_oa_location":{"id":"doi:10.2312/molva.20181102","is_oa":true,"landing_page_url":"https://doi.org/10.2312/molva.20181102","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W91769407","https://openalex.org/W2901556669","https://openalex.org/W2486204270"],"abstract_inverted_index":{"We":[0,117],"present":[1],"a":[2,32],"visual":[3],"exploration":[4,60],"environment":[5,15,101,124,190],"tailored":[6],"for":[7,56,106],"large-scale":[8],"spatio-temporal":[9],"molecular":[10,25,40,45,81,173,197],"dynamics":[11,41],"simulation":[12,134],"data.":[13],"The":[14,99,129,156,179],"is":[16,53,161],"referred":[17],"to":[18,91,194],"as":[19],"VIA-MD":[20,100,123],"(visual":[21],"interactive":[22,58,85],"analysis":[23,65,107,195],"of":[24,43,50,61,80,108,121,135,141,149,158,166,188,196],"dynamics)":[26],"and":[27,63,70,77,96,143,152,175,181],"has":[28],"been":[29],"developed":[30],"in":[31,113,199],"participatory":[33],"design":[34],"process":[35],"with":[36,125,133,139,163,171],"domain":[37],"experts":[38],"on":[39,73],"simulations":[42],"complex":[44,109],"systems.":[46],"A":[47],"key":[48],"feature":[49],"our":[51],"approach":[52],"the":[54,89,119,122,164,185,189],"support":[55],"linked":[57],"3D":[59],"geometry":[62],"statistical":[64,97],"using":[66],"dynamic":[67],"temporal":[68,95],"windowing":[69],"animation.":[71],"Based":[72],"semantic":[74],"level":[75],"descriptions":[76],"hierarchical":[78],"aggregation":[79],"properties":[82,198],"we":[83,144],"enable":[84],"filtering,":[86],"which":[87],"enables":[88],"user":[90],"effectively":[92],"find":[93],"spatial,":[94],"patterns.":[98],"provides":[102],"an":[103,146,153],"unprecedented":[104],"tool":[105],"microscopic":[110],"interactions":[111],"hidden":[112],"large":[114],"data":[115],"volumes.":[116],"demonstrate":[118],"utility":[120],"four":[126],"use":[127,165],"cases.":[128],"first":[130],"two":[131],"deal":[132],"amyloid":[136,154],"plaque":[137],"associated":[138],"development":[140],"Alzheimer's,":[142],"study":[145],"aqueous":[147],"solution":[148],"100":[150],"probes":[151],"fibril.":[155],"identification":[157],"interaction":[159,177],"\"hotspots\"":[160],"achieved":[162],"combined":[167],"filter":[168],"parameters":[169],"connected":[170],"probe":[172],"planarity":[174],"probe-fibril":[176],"energetics.":[178],"third":[180],"fourth":[182],"examples":[183],"show":[184],"wide":[186],"applicability":[187],"by":[191],"applying":[192],"it":[193],"material":[200],"design.":[201]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
