{"id":"https://openalex.org/W2100749878","doi":"https://doi.org/10.2312/localchapterevents/tpcg/tpcg11/017-024","title":"Morphological Analysis from Images of Hyphal Growth using a Fractional Dynamic Model","display_name":"Morphological Analysis from Images of Hyphal Growth using a Fractional Dynamic Model","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2100749878","doi":"https://doi.org/10.2312/localchapterevents/tpcg/tpcg11/017-024","mag":"2100749878"},"language":"en","primary_location":{"id":"pmh:oai:arrow.dit.ie:engschelebk-1008","is_oa":true,"landing_page_url":"https://arrow.dit.ie/engschelebk/8","pdf_url":"https://arrow.dit.ie/engschelebk/8","source":{"id":"https://openalex.org/S4377196307","display_name":"Arrow - TU Dublin (Technological University Dublin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210144925","host_organization_name":"Technological University Dublin","host_organization_lineage":["https://openalex.org/I4210144925"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Books/Book chapters","raw_type":"text"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arrow.dit.ie/engschelebk/8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019970245","display_name":"Jonathan Blackledge","orcid":"https://orcid.org/0000-0002-2986-2339"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Blackledge, Jonathan M.","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5041131742","display_name":"David J. Barry","orcid":"https://orcid.org/0000-0003-2763-5244"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Barry, D. J.","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5019970245"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"17","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10591","display_name":"Theoretical and Computational Physics","score":0.9247000217437744,"subfield":{"id":"https://openalex.org/subfields/3104","display_name":"Condensed Matter Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10591","display_name":"Theoretical and Computational Physics","score":0.9247000217437744,"subfield":{"id":"https://openalex.org/subfields/3104","display_name":"Condensed Matter Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.6990871429443359},{"id":"https://openalex.org/keywords/fractal-analysis","display_name":"Fractal analysis","score":0.5587067604064941},{"id":"https://openalex.org/keywords/mycelium","display_name":"Mycelium","score":0.55190110206604},{"id":"https://openalex.org/keywords/fractal-dimension","display_name":"Fractal dimension","score":0.5291048884391785},{"id":"https://openalex.org/keywords/hypha","display_name":"Hypha","score":0.506416916847229},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4957335889339447},{"id":"https://openalex.org/keywords/aspergillus-oryzae","display_name":"Aspergillus oryzae","score":0.4952801764011383},{"id":"https://openalex.org/keywords/identifiability","display_name":"Identifiability","score":0.49036097526550293},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4802325367927551},{"id":"https://openalex.org/keywords/fractal","display_name":"Fractal","score":0.47888749837875366},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.45256948471069336},{"id":"https://openalex.org/keywords/aspergillus-flavus","display_name":"Aspergillus flavus","score":0.4329327344894409},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3277502655982971},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.2444954514503479},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.22483983635902405},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.2047508955001831},{"id":"https://openalex.org/keywords/fermentation","display_name":"Fermentation","score":0.18011733889579773},{"id":"https://openalex.org/keywords/food-science","display_name":"Food science","score":0.11884501576423645},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.0930977463722229}],"concepts":[{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.6990871429443359},{"id":"https://openalex.org/C162494671","wikidata":"https://www.wikidata.org/wiki/Q2845227","display_name":"Fractal analysis","level":4,"score":0.5587067604064941},{"id":"https://openalex.org/C133479454","wikidata":"https://www.wikidata.org/wiki/Q326228","display_name":"Mycelium","level":2,"score":0.55190110206604},{"id":"https://openalex.org/C26546657","wikidata":"https://www.wikidata.org/wiki/Q1412452","display_name":"Fractal dimension","level":3,"score":0.5291048884391785},{"id":"https://openalex.org/C90080823","wikidata":"https://www.wikidata.org/wiki/Q193129","display_name":"Hypha","level":2,"score":0.506416916847229},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4957335889339447},{"id":"https://openalex.org/C2781204770","wikidata":"https://www.wikidata.org/wiki/Q22662068","display_name":"Aspergillus oryzae","level":3,"score":0.4952801764011383},{"id":"https://openalex.org/C122770356","wikidata":"https://www.wikidata.org/wiki/Q1656753","display_name":"Identifiability","level":2,"score":0.49036097526550293},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4802325367927551},{"id":"https://openalex.org/C40636538","wikidata":"https://www.wikidata.org/wiki/Q81392","display_name":"Fractal","level":2,"score":0.47888749837875366},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.45256948471069336},{"id":"https://openalex.org/C2777292910","wikidata":"https://www.wikidata.org/wiki/Q137096","display_name":"Aspergillus flavus","level":2,"score":0.4329327344894409},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3277502655982971},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.2444954514503479},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.22483983635902405},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.2047508955001831},{"id":"https://openalex.org/C100544194","wikidata":"https://www.wikidata.org/wiki/Q41760","display_name":"Fermentation","level":2,"score":0.18011733889579773},{"id":"https://openalex.org/C31903555","wikidata":"https://www.wikidata.org/wiki/Q1637030","display_name":"Food science","level":1,"score":0.11884501576423645},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0930977463722229},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"pmh:oai:arrow.dit.ie:engschelebk-1008","is_oa":true,"landing_page_url":"https://arrow.dit.ie/engschelebk/8","pdf_url":"https://arrow.dit.ie/engschelebk/8","source":{"id":"https://openalex.org/S4377196307","display_name":"Arrow - TU Dublin (Technological University Dublin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210144925","host_organization_name":"Technological University Dublin","host_organization_lineage":["https://openalex.org/I4210144925"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Books/Book chapters","raw_type":"text"},{"id":"pmh:oai:arrow.tudublin.ie:engschelebk-1008","is_oa":true,"landing_page_url":"https://arrow.tudublin.ie/engschelebk/8","pdf_url":"https://arrow.tudublin.ie/engschelebk/8","source":{"id":"https://openalex.org/S4306402084","display_name":"ARROW@Dublin Institute of Technology (Dublin Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I115570527","host_organization_name":"Dublin Institute of Technology","host_organization_lineage":["https://openalex.org/I115570527"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Books/Book chapters","raw_type":null},{"id":"doi:10.2312/localchapterevents/tpcg/tpcg11/017-024","is_oa":true,"landing_page_url":"https://doi.org/10.2312/localchapterevents/tpcg/tpcg11/017-024","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"},{"id":"mag:2100749878","is_oa":false,"landing_page_url":"http://www.dit.ie/media/electricalengineering/documents/jonathanblackledge/215.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306533090","display_name":"TPCG","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"TPCG","raw_type":null}],"best_oa_location":{"id":"pmh:oai:arrow.dit.ie:engschelebk-1008","is_oa":true,"landing_page_url":"https://arrow.dit.ie/engschelebk/8","pdf_url":"https://arrow.dit.ie/engschelebk/8","source":{"id":"https://openalex.org/S4377196307","display_name":"Arrow - TU Dublin (Technological University Dublin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210144925","host_organization_name":"Technological University Dublin","host_organization_lineage":["https://openalex.org/I4210144925"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Books/Book chapters","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2100749878.pdf","grobid_xml":"https://content.openalex.org/works/W2100749878.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W78615352","https://openalex.org/W198803232","https://openalex.org/W217584633","https://openalex.org/W632584736","https://openalex.org/W1530811934","https://openalex.org/W1564928555","https://openalex.org/W1767649872","https://openalex.org/W1860179229","https://openalex.org/W1890339435","https://openalex.org/W1966957719","https://openalex.org/W1979356572","https://openalex.org/W1979612429","https://openalex.org/W2003647936","https://openalex.org/W2012518297","https://openalex.org/W2020953676","https://openalex.org/W2040622270","https://openalex.org/W2046898218","https://openalex.org/W2056469199","https://openalex.org/W2056821613","https://openalex.org/W2068966798","https://openalex.org/W2069705327","https://openalex.org/W2078206416","https://openalex.org/W2092337181","https://openalex.org/W2127307173","https://openalex.org/W2129898032","https://openalex.org/W2163482771","https://openalex.org/W2165621061","https://openalex.org/W2229114239","https://openalex.org/W2539708030"],"related_works":["https://openalex.org/W3155025523","https://openalex.org/W1970769278","https://openalex.org/W3156267951","https://openalex.org/W2842887930","https://openalex.org/W3049268257","https://openalex.org/W2999098075","https://openalex.org/W2158922575","https://openalex.org/W176234670","https://openalex.org/W2118905968","https://openalex.org/W29860988","https://openalex.org/W3147569972","https://openalex.org/W1960878081","https://openalex.org/W2321524380"],"abstract_inverted_index":{"The":[0],"development":[1],"of":[2,5,10,24,43,74,78,147,164,167,191,194,205],"methods":[3],"capable":[4],"accurately":[6],"characterising":[7],"the":[8,22,33,72,75,85,119,122,144,158,162,172,219],"morphology":[9],"filamentous":[11],"microbes":[12],"represents":[13],"a":[14,47,99,109,135,153,165,203,213],"significant":[15,44,215],"challenge":[16],"to":[17,84,181],"biotechnologists.":[18],"This":[19,81,117],"is":[20,29,41,70,82,106,212],"because":[21],"productivity":[23],"many":[25],"industrial":[26],"fermentation":[27],"processes":[28],"heavily":[30],"dependent":[31],"on":[32,108,157],"morphological":[34,54],"form":[35],"adopted":[36],"by":[37,57,151],"an":[38,79,188],"organism.":[39,80],"It":[40],"therefore":[42],"value":[45],"if":[46],"quantitative":[48],"model":[49,100,112],"and":[50,91,175,197,223],"associated":[51],"metric(s)":[52],"for":[53,101,121],"forms":[55],"determined":[56,62],"complex":[58],"phenotypes":[59],"can":[60,131],"be":[61,132],"non-invasively,":[63],"e.g.":[64],"through":[65,187],"image":[66],"analysis.":[67],"Specific":[68],"interest":[69],"in":[71,125],"quantification":[73],"branching":[76,88],"behaviour":[77],"due":[83],"link":[86],"between":[87,218],"frequency,":[89],"biomass":[90],"metabolite":[92],"production.":[93],"In":[94,140,161],"this":[95,126],"paper":[96,127],"we":[97,142,208],"present":[98],"three-dimensional":[102],"microbial":[103,129],"growth":[104,130,177,225],"that":[105,210],"based":[107,156],"fractional":[110],"dynamic":[111],"involving":[113],"separable":[114],"coordinate":[115],"geometry.":[116],"provides":[118],"focus":[120],"approach":[123],"reported":[124],"where":[128],"quantified":[133],"using":[134],"sample":[136],"microscopic":[137],"digital":[138],"image.":[139],"particular,":[141],"study":[143],"fractal":[145,173,221],"dimension":[146,174,222],"fungal":[148],"mycelial":[149],"structures":[150],"generating":[152],"'fractal":[154],"signal'":[155],"object":[159],"boundary.":[160],"analysis":[163,190],"population":[166],"Aspergillus":[168],"oryzae":[169,199],"mycelia,":[170,200],"both":[171],"hyphal":[176,224],"unit":[178],"are":[179],"found":[180],"increase":[182],"together":[183],"over":[184],"time.":[185],"Further,":[186],"extensive":[189],"different":[192,206],"populations":[193],"Penicillium":[195],"chrysogenum":[196],"A.":[198],"cultivated":[201],"under":[202],"variety":[204],"conditions,":[207],"show":[209],"there":[211],"statistically":[214],"logarithmic":[216],"correlation":[217],"boundary":[220],"unit.":[226]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
