{"id":"https://openalex.org/W4317475544","doi":"https://doi.org/10.2312/evs.20221103","title":"CellTrackVis: Analyzing the Performance of Cell Tracking Algorithms","display_name":"CellTrackVis: Analyzing the Performance of Cell Tracking Algorithms","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4317475544","doi":"https://doi.org/10.2312/evs.20221103","pmid":"https://pubmed.ncbi.nlm.nih.gov/36656607"},"language":"en","primary_location":{"id":"pmid:36656607","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36656607","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Eurographics/IEEE VGTC Symposium on Visualization : EUROVIS : [proceedings]. Eurographics/IEEE VGTC Symposium on Visualization","raw_type":null},"type":"article","indexed_in":["datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9841471","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103113423","display_name":"Weizi Li","orcid":"https://orcid.org/0000-0002-0780-738X"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Li, Weimin","raw_affiliation_strings":["Clemson University, Clemson, South Carolina, United States","School of Computing, Clemson University, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clemson University, Clemson, South Carolina, United States","institution_ids":["https://openalex.org/I8078737"]},{"raw_affiliation_string":"School of Computing, Clemson University, United States","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016555558","display_name":"X Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhang, Xiang","raw_affiliation_strings":["Clemson University, Clemson, South Carolina, United States","School of Computing, Clemson University, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clemson University, Clemson, South Carolina, United States","institution_ids":["https://openalex.org/I8078737"]},{"raw_affiliation_string":"School of Computing, Clemson University, United States","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Stern, Alan","orcid":"https://orcid.org/0000-0002-7772-642X"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stern, Alan","raw_affiliation_strings":["Mount Sinai, New York, New York, United States","Icahn School of Medicine at Mount Sinai, New York, United States"],"raw_orcid":"https://orcid.org/0000-0002-7772-642X","affiliations":[{"raw_affiliation_string":"Mount Sinai, New York, New York, United States","institution_ids":[]},{"raw_affiliation_string":"Icahn School of Medicine at Mount Sinai, New York, United States","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089614989","display_name":"Marc R. Birtwistle","orcid":"https://orcid.org/0000-0002-0341-0705"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Birtwistle, Marc R.","raw_affiliation_strings":["Clemson University, Clemson, South Carolina, United States","Department of Chemical and Biomolecular Engineering, Clemson University, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clemson University, Clemson, South Carolina, United States","institution_ids":["https://openalex.org/I8078737"]},{"raw_affiliation_string":"Department of Chemical and Biomolecular Engineering, Clemson University, United States","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102993647","display_name":"Federico Iuricich","orcid":"https://orcid.org/0000-0003-1782-9715"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Iuricich, Federico","raw_affiliation_strings":["Clemson University, Clemson, South Carolina, United States","School of Computing, Clemson University, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clemson University, Clemson, South Carolina, United States","institution_ids":["https://openalex.org/I8078737"]},{"raw_affiliation_string":"School of Computing, Clemson University, United States","institution_ids":["https://openalex.org/I8078737"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5103113423"],"corresponding_institution_ids":["https://openalex.org/I8078737"],"apc_list":null,"apc_paid":null,"fwci":0.5281,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.79445289,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"2022","issue":null,"first_page":"115","last_page":"119"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7955336570739746},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.7356612682342529},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.707762598991394},{"id":"https://openalex.org/keywords/debugging","display_name":"Debugging","score":0.6827782392501831},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6387006044387817},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5657877922058105},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.5356513857841492},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5073077082633972},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47126126289367676},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.46146681904792786},{"id":"https://openalex.org/keywords/tracking-system","display_name":"Tracking system","score":0.41622233390808105},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3549702763557434},{"id":"https://openalex.org/keywords/kalman-filter","display_name":"Kalman filter","score":0.11510029435157776},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.06902164220809937}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7955336570739746},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.7356612682342529},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.707762598991394},{"id":"https://openalex.org/C168065819","wikidata":"https://www.wikidata.org/wiki/Q845566","display_name":"Debugging","level":2,"score":0.6827782392501831},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6387006044387817},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5657877922058105},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.5356513857841492},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5073077082633972},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47126126289367676},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.46146681904792786},{"id":"https://openalex.org/C154586513","wikidata":"https://www.wikidata.org/wiki/Q4420972","display_name":"Tracking system","level":3,"score":0.41622233390808105},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3549702763557434},{"id":"https://openalex.org/C157286648","wikidata":"https://www.wikidata.org/wiki/Q846780","display_name":"Kalman filter","level":2,"score":0.11510029435157776},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.06902164220809937},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"pmid:36656607","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36656607","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Eurographics/IEEE VGTC Symposium on Visualization : EUROVIS : [proceedings]. Eurographics/IEEE VGTC Symposium on Visualization","raw_type":null},{"id":"pmh:oai:open.clemson.edu:all_data-1358","is_oa":false,"landing_page_url":"https://open.clemson.edu/all_data/358","pdf_url":null,"source":{"id":"https://openalex.org/S4377196397","display_name":"TigerPrints (Clemson University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I8078737","host_organization_name":"Clemson University","host_organization_lineage":["https://openalex.org/I8078737"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"All Data Sets","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:9841471","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9841471","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Eurograph IEEE VGTC Symp Vis","raw_type":"Text"},{"id":"doi:10.2312/evs.20221103","is_oa":true,"landing_page_url":"https://doi.org/10.2312/evs.20221103","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":""}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:9841471","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9841471","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Eurograph IEEE VGTC Symp Vis","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1963884621","https://openalex.org/W1988856432","https://openalex.org/W2023307390","https://openalex.org/W2038009865","https://openalex.org/W2093846523","https://openalex.org/W2100334298","https://openalex.org/W2105916176","https://openalex.org/W2126516766","https://openalex.org/W2139442812","https://openalex.org/W2140180589","https://openalex.org/W2167279371","https://openalex.org/W2515839014","https://openalex.org/W2529052661","https://openalex.org/W2758694956","https://openalex.org/W2955521425","https://openalex.org/W3015600294","https://openalex.org/W4226542664"],"related_works":["https://openalex.org/W1543936162","https://openalex.org/W377974473","https://openalex.org/W3021920309","https://openalex.org/W1971776229","https://openalex.org/W2030712947","https://openalex.org/W2009981620","https://openalex.org/W2766961550","https://openalex.org/W2054235656","https://openalex.org/W35704881","https://openalex.org/W2143832719"],"abstract_inverted_index":{"Live-cell":[0],"imaging":[1],"is":[2,23],"a":[3,20,90,127,132],"common":[4],"data":[5,109],"acquisition":[6,56,61],"technique":[7],"used":[8,125],"by":[9],"biologists":[10,112],"to":[11,37,70,80,110,137],"analyze":[12],"cell":[13,59,63,73,96,104,134],"behavior.":[14],"Since":[15],"manually":[16],"tracking":[17,50,97,135,144],"cells":[18],"in":[19,32],"video":[21],"sequence":[22],"extremely":[24],"time-consuming,":[25],"many":[26,66],"automatic":[27],"algorithms":[28,45],"have":[29],"been":[30],"developed":[31],"the":[33,39,53,83,114],"last":[34],"twenty":[35],"years":[36],"accomplish":[38],"task.":[40],"However,":[41],"none":[42],"of":[43,55],"these":[44],"can":[46,123],"yet":[47],"claim":[48],"robust":[49],"performance":[51],"at":[52],"varying":[54],"conditions":[57],"(e.g.,":[58],"type,":[60],"device,":[62],"treatments).":[64],"While":[65],"visualization":[67,92],"tools":[68,79],"exist":[69],"help":[71,81,111],"with":[72,82,106],"behavior":[74],"analysis,":[75],"there":[76],"are":[77],"no":[78],"algorithm's":[84],"validation.":[85],"This":[86],"paper":[87],"proposes":[88],"CellTrackVis,":[89],"new":[91,133],"tool":[93,129],"for":[94,117],"evaluating":[95],"algorithms.":[98],"CellTrackVis":[99],"allows":[100],"comparing":[101],"automatically":[102],"generated":[103],"tracks":[105],"ground":[107],"truth":[108],"select":[113],"best-suited":[115],"algorithm":[116,136],"their":[118],"experimented":[119],"pipeline.":[120],"Moreover,":[121],"CellTackVis":[122],"be":[124],"as":[126],"debugging":[128],"while":[130],"developing":[131],"investigate":[138],"where,":[139],"when,":[140],"and":[141],"why":[142],"each":[143],"error":[145],"occurred.":[146]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
