{"id":"https://openalex.org/W6945412777","doi":"https://doi.org/10.2312/evp.20231075","title":"Visual Linkage and Interactive Features of Evidente for an Enhanced Analysis of SNP-based Phylogenies","display_name":"Visual Linkage and Interactive Features of Evidente for an Enhanced Analysis of SNP-based Phylogenies","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W6945412777","doi":"https://doi.org/10.2312/evp.20231075"},"language":"en","primary_location":{"id":"doi:10.2312/evp.20231075","is_oa":true,"landing_page_url":"https://doi.org/10.2312/evp.20231075","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":""},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2312/evp.20231075","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Witte Paz, Mathias","orcid":null},"institutions":[{"id":"https://openalex.org/I4210163477","display_name":"Institute for Medical Informatics and Biostatistics","ror":"https://ror.org/04e79zk25","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210163477"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Witte Paz, Mathias","raw_affiliation_strings":["Institute for Bioinformatics and Medical Informatics, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics and Medical Informatics, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210163477"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Harbig, Theresa","orcid":null},"institutions":[{"id":"https://openalex.org/I4210163477","display_name":"Institute for Medical Informatics and Biostatistics","ror":"https://ror.org/04e79zk25","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210163477"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Harbig, Theresa","raw_affiliation_strings":["Institute for Bioinformatics and Medical Informatics, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics and Medical Informatics, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210163477"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Varga, Dolores","orcid":null},"institutions":[{"id":"https://openalex.org/I4210163477","display_name":"Institute for Medical Informatics and Biostatistics","ror":"https://ror.org/04e79zk25","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210163477"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Varga, Dolores","raw_affiliation_strings":["Institute for Bioinformatics and Medical Informatics, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics and Medical Informatics, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210163477"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Kr\u00e4nzle, Eileen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210163477","display_name":"Institute for Medical Informatics and Biostatistics","ror":"https://ror.org/04e79zk25","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210163477"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Kr\u00e4nzle, Eileen","raw_affiliation_strings":["Institute for Bioinformatics and Medical Informatics, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics and Medical Informatics, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210163477"]}]},{"author_position":"last","author":{"id":null,"display_name":"Nieselt, Kay","orcid":null},"institutions":[{"id":"https://openalex.org/I4210163477","display_name":"Institute for Medical Informatics and Biostatistics","ror":"https://ror.org/04e79zk25","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210163477"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nieselt, Kay","raw_affiliation_strings":["Institute for Bioinformatics and Medical Informatics, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics and Medical Informatics, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210163477"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210163477"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.55534554,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T10733","display_name":"Wheat and Barley Genetics and Pathology","score":0.10840000212192535,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10733","display_name":"Wheat and Barley Genetics and Pathology","score":0.10840000212192535,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.030400000512599945,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.015399999916553497,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7257000207901001},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5364000201225281},{"id":"https://openalex.org/keywords/linkage","display_name":"Linkage (software)","score":0.5192000269889832},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.513700008392334},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.4887000024318695},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4706000089645386},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.41200000047683716},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.4049000144004822}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7257000207901001},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5364000201225281},{"id":"https://openalex.org/C31266012","wikidata":"https://www.wikidata.org/wiki/Q6554340","display_name":"Linkage (software)","level":3,"score":0.5192000269889832},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.513700008392334},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49950000643730164},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.4887000024318695},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4706000089645386},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4530999958515167},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.424699991941452},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4124000072479248},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.41200000047683716},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.4049000144004822},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.3675000071525574},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3467999994754791},{"id":"https://openalex.org/C2776502983","wikidata":"https://www.wikidata.org/wiki/Q690182","display_name":"Contrast (vision)","level":2,"score":0.34630000591278076},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.34380000829696655},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.3255999982357025},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.3122999966144562},{"id":"https://openalex.org/C99740376","wikidata":"https://www.wikidata.org/wiki/Q17092520","display_name":"Interactive visual analysis","level":4,"score":0.3091999888420105},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.3075999915599823},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.30480000376701355},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29600000381469727},{"id":"https://openalex.org/C186413461","wikidata":"https://www.wikidata.org/wiki/Q744727","display_name":"Genetic association","level":5,"score":0.2621000111103058},{"id":"https://openalex.org/C124388736","wikidata":"https://www.wikidata.org/wiki/Q3247497","display_name":"Tree of life (biology)","level":4,"score":0.2612999975681305},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.2597000002861023},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.25589999556541443},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25380000472068787}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.2312/evp.20231075","is_oa":true,"landing_page_url":"https://doi.org/10.2312/evp.20231075","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":""}],"best_oa_location":{"id":"doi:10.2312/evp.20231075","is_oa":true,"landing_page_url":"https://doi.org/10.2312/evp.20231075","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":""},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.4625222682952881,"display_name":"Life below water"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Phylogenetic":[0],"trees":[1],"of":[2,5,76,86,94],"a":[3,32,43],"set":[4],"bacterial":[6],"strains":[7],"are":[8,18],"often":[9],"used":[10],"to":[11,61,104],"analyze":[12],"their":[13],"evolutionary":[14],"relationships":[15],"and":[16,39,48,50,119],"they":[17],"commonly":[19],"based":[20],"on":[21],"genomic":[22],"features,":[23],"such":[24,115],"as":[25,116],"single":[26],"nucleotide":[27],"polymorphisms":[28],"(SNPs).":[29],"Evidente":[30,64,73,95],"-":[31,36],"recently":[33],"published":[34],"tool":[35],"provides":[37],"visual":[38,56],"analytical":[40],"linkage":[41],"across":[42],"phylogenetic":[44],"tree,":[45],"SNP":[46],"data":[47],"metadata,":[49],"integrates":[51],"them":[52],"into":[53],"one":[54],"interactive":[55],"analytics":[57],"platform.":[58],"In":[59],"contrast":[60],"other":[62],"approaches,":[63],"shows":[65],"how":[66],"SNPs":[67],"agree":[68],"with":[69],"the":[70,77,87,98],"tree":[71],"structure.":[72],"is":[74],"part":[75],"TueVis":[78],"server":[79],"(https://evidente-tuevis.cs.uni-tuebingen.de/).":[80],"Here,":[81],"we":[82,108],"give":[83],"an":[84],"overview":[85],"tasks":[88],"supported":[89],"by":[90],"Evidente.":[91],"The":[92],"version":[93],"described":[96],"in":[97],"publication":[99],"can":[100],"seamlessly":[101],"visualize":[102],"up":[103],"150":[105],"strains.":[106],"Thus,":[107],"introduce":[109],"further":[110],"enhancements":[111],"for":[112],"larger":[113],"trees,":[114],"data-driven":[117],"aggregation":[118],"semantic":[120],"zooming.":[121]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}