{"id":"https://openalex.org/W2625792627","doi":"https://doi.org/10.2312/eurovisshort.20171144","title":"Spatiotemporal Visualization of Gene Expression in the Developing Mouse Brain","display_name":"Spatiotemporal Visualization of Gene Expression in the Developing Mouse Brain","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2625792627","doi":"https://doi.org/10.2312/eurovisshort.20171144","mag":"2625792627"},"language":"en","primary_location":{"id":"doi:10.2312/eurovisshort.20171144","is_oa":true,"landing_page_url":"https://doi.org/10.2312/eurovisshort.20171144","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2312/eurovisshort.20171144","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100613176","display_name":"Qihang Li","orcid":"https://orcid.org/0009-0004-2731-8358"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Li, Qihang","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101402315","display_name":"Kun Huang","orcid":"https://orcid.org/0000-0002-3347-0688"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Huang, Kun","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5002832419","display_name":"Raghu Machiraju","orcid":"https://orcid.org/0000-0002-8101-8119"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Machiraju, Raghu","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100613176"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9283000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9283000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5839887857437134},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5283594727516174},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5162027478218079},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.508164644241333},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46727287769317627},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4287724196910858},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3624994456768036},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.36125296354293823},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.35402119159698486},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2682345509529114}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5839887857437134},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5283594727516174},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5162027478218079},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.508164644241333},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46727287769317627},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4287724196910858},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3624994456768036},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.36125296354293823},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35402119159698486},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2682345509529114},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.2312/eurovisshort.20171144","is_oa":true,"landing_page_url":"https://doi.org/10.2312/eurovisshort.20171144","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.2312/eurovisshort.20171144","is_oa":true,"landing_page_url":"https://doi.org/10.2312/eurovisshort.20171144","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1990089119","https://openalex.org/W2003572485","https://openalex.org/W2058166388","https://openalex.org/W2116015974","https://openalex.org/W2121908573","https://openalex.org/W2129628124","https://openalex.org/W2409811767"],"related_works":["https://openalex.org/W2004132347","https://openalex.org/W270290883","https://openalex.org/W2411966788","https://openalex.org/W182144946","https://openalex.org/W2319639718","https://openalex.org/W1967308064","https://openalex.org/W3184531062","https://openalex.org/W2082506073","https://openalex.org/W2409811767","https://openalex.org/W1203537712","https://openalex.org/W2758790210","https://openalex.org/W1487758745","https://openalex.org/W2899675727","https://openalex.org/W2960638773","https://openalex.org/W2182124713","https://openalex.org/W2077540165","https://openalex.org/W2087251613","https://openalex.org/W2604491233","https://openalex.org/W2052536256","https://openalex.org/W3037834064"],"abstract_inverted_index":{"Exploring":[0],"and":[1,46,57,98,104,111,128],"visualizing":[2],"the":[3,19,24,51,60,71,82,93,108,118,121,133,143],"spatiotemporal":[4,153],"fold":[5,61,73,86],"change":[6,87],"of":[7,54,63,96,113,120,142,155],"gene":[8,64,91,114,156],"expression":[9,65,134,157],"is":[10],"an":[11],"increasingly":[12],"important":[13],"challenge":[14],"especially":[15],"in":[16,158],"structures":[17],"as":[18],"developing":[20,160],"brain.":[21,161],"Focusing":[22],"on":[23],"Allen":[25],"Developing":[26],"Mouse":[27],"Brain":[28],"data,":[29],"we":[30,148],"propose":[31],"a":[32,89,140,159],"visual":[33,145],"analytic":[34,146],"method":[35,123],"to":[36,49,66,69,106,151],"facilitate":[37],"such":[38],"exploration.":[39],"We":[40,79,116],"first":[41],"use":[42,59],"3D":[43,102],"brain":[44],"atlases":[45],"developmental":[47],"ontology":[48],"capture":[50],"spatial":[52,72,85],"orientations":[53],"entire":[55,94],"structures,":[56],"next":[58],"changes":[62,74,154],"weight":[67],"them":[68,100],"denote":[70],"between":[75],"any":[76],"given":[77,90],"stages.":[78],"then":[80],"determine":[81],"overall":[83],"aggregate":[84],"for":[88],"across":[92],"set":[95],"stages":[97],"visualize":[99,152],"using":[101],"renderings":[103],"PCA":[105],"glean":[107],"likely":[109],"directionality":[110],"gradients":[112],"expression.":[115],"examine":[117],"performance":[119],"proposed":[122],"by":[124],"investigating":[125],"several":[126],"patterns":[127],"find":[129],"that":[130],"they":[131],"reflect":[132],"data.":[135],"This":[136],"short":[137],"paper":[138],"describes":[139],"portion":[141],"larger":[144],"framework":[147],"are":[149],"constructing":[150]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
