{"id":"https://openalex.org/W3037566724","doi":"https://doi.org/10.2312/eurova.20201083","title":"Quality Metrics to Guide Visual Analysis of High Dimensional Genomics Data","display_name":"Quality Metrics to Guide Visual Analysis of High Dimensional Genomics Data","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3037566724","doi":"https://doi.org/10.2312/eurova.20201083","mag":"3037566724"},"language":"en","primary_location":{"id":"doi:10.2312/eurova.20201083","is_oa":true,"landing_page_url":"https://doi.org/10.2312/eurova.20201083","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2312/eurova.20201083","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005188502","display_name":"Sara Johansson Fernstad","orcid":"https://orcid.org/0000-0003-4518-5144"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Fernstad, Sara Johansson","raw_affiliation_strings":["Newcastle University, Newcastle upon Tyne, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Newcastle University, Newcastle upon Tyne, United Kingdom","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056650995","display_name":"Alexander Macquisten","orcid":"https://orcid.org/0000-0001-6942-1880"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Macquisten, Alexander","raw_affiliation_strings":["Newcastle University, Newcastle upon Tyne, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Newcastle University, Newcastle upon Tyne, United Kingdom","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059068212","display_name":"Janet Berrington","orcid":"https://orcid.org/0000-0002-6185-2843"},"institutions":[{"id":"https://openalex.org/I2801663869","display_name":"Newcastle upon Tyne Hospitals NHS Foundation Trust","ror":"https://ror.org/05p40t847","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2801663869"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Berrington, Janet","raw_affiliation_strings":["Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, United Kingdom","institution_ids":["https://openalex.org/I2801663869"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050393329","display_name":"Nicholas D. Embleton","orcid":"https://orcid.org/0000-0003-3750-5566"},"institutions":[{"id":"https://openalex.org/I2801663869","display_name":"Newcastle upon Tyne Hospitals NHS Foundation Trust","ror":"https://ror.org/05p40t847","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2801663869"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Embleton, Nicholas","raw_affiliation_strings":["Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Newcastle upon Tyne Hospitals NHS Foundation Trust, Newcastle upon Tyne, United Kingdom","institution_ids":["https://openalex.org/I2801663869"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029828038","display_name":"Christopher J. Stewart","orcid":"https://orcid.org/0000-0002-6033-338X"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stewart, Christopher","raw_affiliation_strings":["Newcastle University, Newcastle upon Tyne, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Newcastle University, Newcastle upon Tyne, United Kingdom","institution_ids":["https://openalex.org/I84884186"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5005188502"],"corresponding_institution_ids":["https://openalex.org/I84884186"],"apc_list":null,"apc_paid":null,"fwci":0.0829,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.43573418,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"31","last_page":"35"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8917999863624573,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8917999863624573,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.8571000099182129,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7814000248908997,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6374773979187012},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5126251578330994},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.4840523600578308},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.46868517994880676},{"id":"https://openalex.org/keywords/data-quality","display_name":"Data quality","score":0.41080060601234436},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.38349002599716187},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3389089107513428},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3043222427368164},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.16815432906150818},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.14494234323501587},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12040793895721436},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11490675806999207}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6374773979187012},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5126251578330994},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4840523600578308},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.46868517994880676},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.41080060601234436},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.38349002599716187},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3389089107513428},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3043222427368164},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.16815432906150818},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.14494234323501587},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12040793895721436},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11490675806999207},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.2312/eurova.20201083","is_oa":true,"landing_page_url":"https://doi.org/10.2312/eurova.20201083","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"mag:3037566724","is_oa":false,"landing_page_url":"https://eprint.ncl.ac.uk/file_store/production/267594/340677F3-B708-485C-9A23-59C3AFADD3AF.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Eurographics","raw_type":null}],"best_oa_location":{"id":"doi:10.2312/eurova.20201083","is_oa":true,"landing_page_url":"https://doi.org/10.2312/eurova.20201083","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3204379382","https://openalex.org/W2527000003"],"abstract_inverted_index":{"Studies":[0],"of":[1,15,17,19,35,68,74],"genome":[2],"sequenced":[3],"data":[4,48],"are":[5,42],"increasingly":[6],"common":[7],"in":[8,22,25,82,87],"many":[9],"domains.":[10],"Technological":[11],"advances":[12],"enable":[13,31],"detection":[14],"hundreds":[16],"thousands":[18],"biological":[20],"entities":[21],"samples,":[23],"resulting":[24],"extremely":[26],"high":[27],"dimensional":[28],"data.":[29],"To":[30],"exploration":[32],"and":[33,47,65],"understanding":[34],"such":[36],"data,":[37],"efficient":[38],"visual":[39,83],"analysis":[40],"approaches":[41],"needed":[43],"that":[44],"take":[45],"domain":[46],"specific":[49],"requirements":[50],"into":[51],"account.":[52],"Based":[53],"on":[54],"a":[55,63,66],"survey":[56],"with":[57],"bioscience":[58],"experts,":[59],"this":[60],"paper":[61],"suggests":[62],"categorisation":[64],"set":[67],"quality":[69],"metrics":[70],"to":[71],"identify":[72],"patterns":[73],"interest,":[75],"which":[76],"can":[77],"be":[78],"used":[79],"as":[80,85],"guidance":[81],"analysis,":[84],"demonstrated":[86],"the":[88],"paper.":[89]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
