{"id":"https://openalex.org/W2292702185","doi":"https://doi.org/10.2312/egs.20081037","title":"Compensation of the Light Attenuation with Depth of Images Captured by a Confocal Microscope Using a MRF Deformation Model and Graph Cuts","display_name":"Compensation of the Light Attenuation with Depth of Images Captured by a Confocal Microscope Using a MRF Deformation Model and Graph Cuts","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W2292702185","doi":"https://doi.org/10.2312/egs.20081037","mag":"2292702185"},"language":"en","primary_location":{"id":"doi:10.2312/egs.20081037","is_oa":true,"landing_page_url":"https://doi.org/10.2312/egs.20081037","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2312/egs.20081037","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052278994","display_name":"Martin \u010capek","orcid":"https://orcid.org/0000-0002-5705-8196"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Capek, Martin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058909147","display_name":"Jan Mich\u00e1lek","orcid":null},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Michalek, Jan","raw_affiliation_strings":["Czech Academy of Sciences, Prague, Czechia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Czech Academy of Sciences, Prague, Czechia","institution_ids":["https://openalex.org/I202391551"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070110677","display_name":"Ji\u0159\u0131\u0301 Jan\u00e1\u010dek","orcid":"https://orcid.org/0000-0003-0286-4999"},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Janacek, Jiri","raw_affiliation_strings":["Czech Academy of Sciences, Prague, Czechia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Czech Academy of Sciences, Prague, Czechia","institution_ids":["https://openalex.org/I202391551"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061372385","display_name":"Lucie Kub\u00ednov\u00e1","orcid":"https://orcid.org/0000-0002-2977-8460"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kubinova, Lucie","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087126565","display_name":"Karel H\u00e1na","orcid":"https://orcid.org/0000-0002-5105-5015"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hana, Karel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5000581070","display_name":"Pavel Smr\u010dka","orcid":"https://orcid.org/0000-0002-9947-4470"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Smrcka, Pavel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"123","last_page":"126"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10638","display_name":"Optical measurement and interference techniques","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/attenuation","display_name":"Attenuation","score":0.7652521133422852},{"id":"https://openalex.org/keywords/microscope","display_name":"Microscope","score":0.6890130639076233},{"id":"https://openalex.org/keywords/confocal","display_name":"Confocal","score":0.6746270656585693},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.5780360698699951},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5527603626251221},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5509865283966064},{"id":"https://openalex.org/keywords/compensation","display_name":"Compensation (psychology)","score":0.5280390977859497},{"id":"https://openalex.org/keywords/optical-microscope","display_name":"Optical microscope","score":0.5015609264373779},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4816631078720093},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4552229642868042},{"id":"https://openalex.org/keywords/deformation","display_name":"Deformation (meteorology)","score":0.45115649700164795},{"id":"https://openalex.org/keywords/confocal-microscopy","display_name":"Confocal microscopy","score":0.43328115344047546},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.43207675218582153},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.38951730728149414},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.19938409328460693},{"id":"https://openalex.org/keywords/scanning-electron-microscope","display_name":"Scanning electron microscope","score":0.0905439555644989}],"concepts":[{"id":"https://openalex.org/C184652730","wikidata":"https://www.wikidata.org/wiki/Q2357982","display_name":"Attenuation","level":2,"score":0.7652521133422852},{"id":"https://openalex.org/C67649825","wikidata":"https://www.wikidata.org/wiki/Q196538","display_name":"Microscope","level":2,"score":0.6890130639076233},{"id":"https://openalex.org/C136009344","wikidata":"https://www.wikidata.org/wiki/Q336201","display_name":"Confocal","level":2,"score":0.6746270656585693},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.5780360698699951},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5527603626251221},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5509865283966064},{"id":"https://openalex.org/C2780023022","wikidata":"https://www.wikidata.org/wiki/Q1338171","display_name":"Compensation (psychology)","level":2,"score":0.5280390977859497},{"id":"https://openalex.org/C77017923","wikidata":"https://www.wikidata.org/wiki/Q912313","display_name":"Optical microscope","level":3,"score":0.5015609264373779},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4816631078720093},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4552229642868042},{"id":"https://openalex.org/C204366326","wikidata":"https://www.wikidata.org/wiki/Q3027650","display_name":"Deformation (meteorology)","level":2,"score":0.45115649700164795},{"id":"https://openalex.org/C2779178360","wikidata":"https://www.wikidata.org/wiki/Q902045","display_name":"Confocal microscopy","level":2,"score":0.43328115344047546},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.43207675218582153},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.38951730728149414},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.19938409328460693},{"id":"https://openalex.org/C26771246","wikidata":"https://www.wikidata.org/wiki/Q321095","display_name":"Scanning electron microscope","level":2,"score":0.0905439555644989},{"id":"https://openalex.org/C11171543","wikidata":"https://www.wikidata.org/wiki/Q41630","display_name":"Psychoanalysis","level":1,"score":0.0},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.2312/egs.20081037","is_oa":true,"landing_page_url":"https://doi.org/10.2312/egs.20081037","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null},{"id":"mag:2292702185","is_oa":false,"landing_page_url":"https://diglib.eg.org:443/handle/10.2312/egs.20081037.123-126","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Eurographics","raw_type":null}],"best_oa_location":{"id":"doi:10.2312/egs.20081037","is_oa":true,"landing_page_url":"https://doi.org/10.2312/egs.20081037","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3039806006","https://openalex.org/W2938582519","https://openalex.org/W1971681202","https://openalex.org/W2780420936","https://openalex.org/W3149495147","https://openalex.org/W1990639801","https://openalex.org/W2019199702","https://openalex.org/W2818976788","https://openalex.org/W2139876553","https://openalex.org/W2077491411","https://openalex.org/W2062425112","https://openalex.org/W2794141155","https://openalex.org/W2035132642","https://openalex.org/W1796707377","https://openalex.org/W2056711024","https://openalex.org/W2942641470","https://openalex.org/W2860845467","https://openalex.org/W3149694017","https://openalex.org/W2132115318","https://openalex.org/W3101126031"],"abstract_inverted_index":{"We":[0,85],"study":[1],"series":[2,136,163],"of":[3,23,29,37,48,82,97,114,130,133,160],"fluorescent":[4,52],"optical":[5,24,83,98,106,131,140,145],"sections,":[6],"i.e.":[7],"three-dimensional":[8],"(3D)":[9],"biomedical":[10],"images,":[11],"captured":[12],"by":[13,91,126,143],"a":[14,60],"confocal":[15],"laser":[16],"scanning":[17],"microscope":[18],"(CLSM).":[19],"Fluorescent":[20],"image":[21],"intensities":[22,36,96],"sections":[25,38,99,132,141],"from":[26,39],"deep":[27],"layers":[28,42],"the":[30,40,76,87,92,104,109,119,134,144],"specimen":[31],"are":[32,100],"often":[33],"darker":[34],"than":[35,170],"top":[41],"due":[43],"to":[44,103,139,158,165],"absorption":[45],"and":[46,51,168],"scattering":[47],"both":[49],"excitation":[50],"light.":[53],"To":[54],"solve":[55],"this":[56,148],"problem":[57,90],"we":[58,150],"apply":[59],"Markov":[61],"Random":[62],"Field":[63],"(MRF)":[64],"model":[65,71],"\u0096":[66,79],"including":[67],"an":[68,152],"efficient":[69],"deformation":[70],"for":[72,80],"tracking":[73],"structures":[74,161],"within":[75,162],"3D":[77],"images":[78],"computation":[81],"flow.":[84,146],"approach":[86,149],"corresponding":[88],"optimization":[89],"graph":[93],"cuts.":[94],"Image":[95],"recomputed":[101],"according":[102],"found":[105],"flow,":[107],"since":[108],"flow":[110],"gives":[111],"us":[112],"evaluation":[113],"their":[115,166],"proper":[116],"brightness.":[117],"Finally,":[118],"light":[120],"attenuation":[121],"with":[122,137],"depth":[123],"is":[124,155],"compensated":[125],"matching":[127],"accumulative":[128],"histograms":[129],"original":[135],"respect":[138],"improved":[142],"By":[147],"obtain":[151],"algorithm":[153],"that":[154],"less":[156],"sensitive":[157],"changes":[159],"(especially":[164],"enlargement":[167],"diminishing)":[169],"algorithms":[171],"based":[172],"purely":[173],"on":[174],"histogram":[175],"matching,":[176],"warping":[177],"or":[178],"equalization.":[179]},"counts_by_year":[],"updated_date":"2026-07-01T06:00:48.157686","created_date":"2025-10-10T00:00:00"}
