{"id":"https://openalex.org/W2989602784","doi":"https://doi.org/10.2312/egm.20191032","title":"Cytosplore: Interactive Visual Single-Cell Profiling of the Immune System","display_name":"Cytosplore: Interactive Visual Single-Cell Profiling of the Immune System","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2989602784","doi":"https://doi.org/10.2312/egm.20191032","mag":"2989602784"},"language":"en","primary_location":{"id":"pmh:oai:pure.tue.nl:openaire_cris_publications/3a52dc36-7eb2-4b19-bd76-122fd76c7760","is_oa":false,"landing_page_url":"https://research.tue.nl/en/publications/3a52dc36-7eb2-4b19-bd76-122fd76c7760","pdf_url":null,"source":{"id":"https://openalex.org/S4406922641","display_name":"TU/e Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"H\u00f6llt, T, Pezzotti, N, vanUnen, V, Li, N, Koning, F, Eisemann, E, Lelieveldt, B P F & Vilanova, A 2019, Cytosplore : interactive visual single-cell profiling of the immune system. in Dirk Bartz Prize for Visual Computing in Medicine 2019 (Eurographics Medical Prize).","raw_type":"info:eu-repo/semantics/bookPart"},"type":"book-chapter","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2312/egm.20191032","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019308726","display_name":"Thomas H\u00f6llt","orcid":"https://orcid.org/0000-0001-8125-1650"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"H\u00f6llt, Thomas","raw_affiliation_strings":["Leiden University, Medical Centre"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden University, Medical Centre","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034214530","display_name":"Nicola Pezzotti","orcid":"https://orcid.org/0000-0001-7346-9182"},"institutions":[{"id":"https://openalex.org/I98358874","display_name":"Delft University of Technology","ror":"https://ror.org/02e2c7k09","country_code":"NL","type":"education","lineage":["https://openalex.org/I98358874"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Pezzotti, Nicola","raw_affiliation_strings":["(Delft University of Technology)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"(Delft University of Technology)","institution_ids":["https://openalex.org/I98358874"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014254930","display_name":"Vincent van Unen","orcid":"https://orcid.org/0000-0001-9339-8430"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Unen, Vincent Van","raw_affiliation_strings":["Leiden University, Medical Centre"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden University, Medical Centre","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100368012","display_name":"Na Li","orcid":"https://orcid.org/0000-0001-6163-1648"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Li, Na","raw_affiliation_strings":["Leiden University, Medical Centre"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden University, Medical Centre","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064835819","display_name":"Frits Koning","orcid":"https://orcid.org/0000-0002-4007-5715"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Koning, Frits","raw_affiliation_strings":["Leiden University, Medical Centre"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden University, Medical Centre","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048229839","display_name":"Elmar Eisemann","orcid":"https://orcid.org/0000-0003-4153-065X"},"institutions":[{"id":"https://openalex.org/I98358874","display_name":"Delft University of Technology","ror":"https://ror.org/02e2c7k09","country_code":"NL","type":"education","lineage":["https://openalex.org/I98358874"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Eisemann, Elmar","raw_affiliation_strings":["(Delft University of Technology)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"(Delft University of Technology)","institution_ids":["https://openalex.org/I98358874"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019003563","display_name":"Boudewijn P. F. Lelieveldt","orcid":"https://orcid.org/0000-0001-8269-7603"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Lelieveldt, Boudewijn P. F.","raw_affiliation_strings":["Leiden University, Medical Centre"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leiden University, Medical Centre","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086223886","display_name":"Anna Vilanova","orcid":"https://orcid.org/0000-0002-1034-737X"},"institutions":[{"id":"https://openalex.org/I4210099593","display_name":"Computer Algorithms for Medicine","ror":"https://ror.org/00zky6d38","country_code":"AT","type":"facility","lineage":["https://openalex.org/I4210099593"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Vilanova, Anna","raw_affiliation_strings":["Algorithms, Geometry and Applications"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algorithms, Geometry and Applications","institution_ids":["https://openalex.org/I4210099593"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.3183,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.64092527,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7504034638404846},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.672966718673706},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6637604236602783},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.5695412158966064},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4519609212875366},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4385325312614441},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3961493968963623},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.2868995666503906},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25156745314598083}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7504034638404846},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.672966718673706},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6637604236602783},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.5695412158966064},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4519609212875366},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4385325312614441},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3961493968963623},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.2868995666503906},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25156745314598083},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:pure.tue.nl:openaire_cris_publications/3a52dc36-7eb2-4b19-bd76-122fd76c7760","is_oa":false,"landing_page_url":"https://research.tue.nl/en/publications/3a52dc36-7eb2-4b19-bd76-122fd76c7760","pdf_url":null,"source":{"id":"https://openalex.org/S4406922641","display_name":"TU/e Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"H\u00f6llt, T, Pezzotti, N, vanUnen, V, Li, N, Koning, F, Eisemann, E, Lelieveldt, B P F & Vilanova, A 2019, Cytosplore : interactive visual single-cell profiling of the immune system. in Dirk Bartz Prize for Visual Computing in Medicine 2019 (Eurographics Medical Prize).","raw_type":"info:eu-repo/semantics/bookPart"},{"id":"pmh:tue:oai:pure.tue.nl:publications/3a52dc36-7eb2-4b19-bd76-122fd76c7760","is_oa":false,"landing_page_url":"https://research.tue.nl/nl/publications/3a52dc36-7eb2-4b19-bd76-122fd76c7760","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Dirk Bartz Prize for Visual Computing in Medicine 2019 (Eurographics Medical Prize)","raw_type":"info:eu-repo/semantics/bookpart"},{"id":"doi:10.2312/egm.20191032","is_oa":true,"landing_page_url":"https://doi.org/10.2312/egm.20191032","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.2312/egm.20191032","is_oa":true,"landing_page_url":"https://doi.org/10.2312/egm.20191032","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W978737913","https://openalex.org/W2797625601","https://openalex.org/W3047312267","https://openalex.org/W231738529","https://openalex.org/W2239196911","https://openalex.org/W3095930322","https://openalex.org/W1577056505","https://openalex.org/W3081948925","https://openalex.org/W3041166024","https://openalex.org/W2763051133","https://openalex.org/W2068646043","https://openalex.org/W2111298811","https://openalex.org/W2892902767","https://openalex.org/W3092047360","https://openalex.org/W3023988766","https://openalex.org/W157814206","https://openalex.org/W2766239828","https://openalex.org/W2157953225","https://openalex.org/W2042818146","https://openalex.org/W2967588078"],"abstract_inverted_index":{"Recent":[0],"advances":[1],"in":[2,14,61,71,79,107,119],"single-cell":[3,12,101],"acquisition":[4],"technology":[5],"have":[6,104],"led":[7,130],"to":[8,84,131],"a":[9,62],"shift":[10],"towards":[11],"analysis":[13,94,127],"many":[15,53],"fields":[16],"of":[17,23,28,36,64,75,99],"biology.":[18],"In":[19],"immunology,":[20],"detailed":[21],"knowledge":[22],"the":[24,34,72,76,97,117],"cellular":[25,73],"composition":[26,74],"is":[27,45,89],"interest,":[29],"as":[30],"it":[31],"can":[32,82],"be":[33],"cause":[35,41],"deregulated":[37],"immune":[38,50,77],"responses,":[39],"which":[40],"diseases.":[42],"Similarly,":[43],"vaccination":[44],"based":[46],"on":[47],"triggering":[48],"proper":[49],"responses;":[51],"however,":[52],"vaccines":[54],"are":[55,67],"ineffective":[56],"or":[57],"only":[58],"work":[59],"properly":[60],"subset":[63],"those":[65],"who":[66],"vaccinated.":[68],"Identifying":[69],"differences":[70],"system":[78],"such":[80],"cases":[81],"lead":[83],"more":[85],"precise":[86],"treatment.":[87],"Cytosplore":[88,106,123],"an":[90],"integrated,":[91],"interactive":[92],"visual":[93],"framework":[95],"for":[96],"exploration":[98],"large":[100],"datasets.":[102],"We":[103],"developed":[105],"close":[108],"collaboration":[109],"with":[110],"immunology":[111],"researchers":[112],"and":[113,128],"several":[114,132],"partners":[115],"use":[116],"software":[118],"their":[120],"daily":[121],"workflow.":[122],"enables":[124],"efficient":[125],"data":[126],"has":[129],"discoveries":[133],"alongside":[134],"high-impact":[135],"publications.":[136]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
