{"id":"https://openalex.org/W4402148324","doi":"https://doi.org/10.2312/3dor.20241173","title":"SHREC2024: Non-rigid Complementary Shapes Retrieval in Protein-protein Interactions","display_name":"SHREC2024: Non-rigid Complementary Shapes Retrieval in Protein-protein Interactions","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4402148324","doi":"https://doi.org/10.2312/3dor.20241173"},"language":"en","primary_location":{"id":"pmh:oai:HAL:hal-04679654v1","is_oa":true,"landing_page_url":"https://cnam.hal.science/hal-04679654","pdf_url":"https://cnam.hal.science/hal-04679654/document","source":{"id":"https://openalex.org/S4406922461","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://diglib.eg.org/handle/10.2312/3dor20241173","raw_type":"Conference papers"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://cnam.hal.science/hal-04679654/document","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072050834","display_name":"Taher Yacoub","orcid":"https://orcid.org/0009-0006-1542-1264"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Yacoub, Taher","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109187181","display_name":"\u041d \u0410 \u0417\u0430\u0440\u0443\u0431\u0438\u043d\u0430","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zarubina, Nika","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064290852","display_name":"Camille Depenveiller","orcid":"https://orcid.org/0009-0002-4553-0526"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Depenveiller, Camille","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111312330","display_name":"H-P Nguyen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nguyen, Hoang-Phuc","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106949677","display_name":"V-T Vong","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vong, Vinh-Toan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113363513","display_name":"M-T Tran","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tran, Minh-Triet","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081941961","display_name":"Yusuke Kagaya","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kagaya, Yuki","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Nakamura, Tsukasa","orcid":"https://orcid.org/0000-0002-6312-3070"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nakamura, Tsukasa","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062293219","display_name":"Daisuke Kihara","orcid":"https://orcid.org/0000-0003-4091-6614"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kihara, Daisuke","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051148927","display_name":"Florent Langenfeld","orcid":"https://orcid.org/0000-0002-3184-3401"},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]},{"id":"https://openalex.org/I4210134562","display_name":"HESAM Universit\u00e9","ror":"https://ror.org/042949r55","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210134562"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Langenfeld, Florent","raw_affiliation_strings":["GBCM, Conservatoire Nationale des Arts-et-M\u00e9tiers, Hesam Universit\u00e9, France"],"affiliations":[{"raw_affiliation_string":"GBCM, Conservatoire Nationale des Arts-et-M\u00e9tiers, Hesam Universit\u00e9, France","institution_ids":["https://openalex.org/I4210134562","https://openalex.org/I124158823"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087675495","display_name":"Matthieu Mont\u00e8s","orcid":"https://orcid.org/0000-0001-5921-460X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Montes, Matthieu","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5072050834"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08635209,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.958299994468689,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.958299994468689,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9449999928474426,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.904699981212616,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5357813835144043},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.42998605966567993},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3296169638633728},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.30004632472991943},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.16840675473213196},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12082910537719727}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5357813835144043},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.42998605966567993},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3296169638633728},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.30004632472991943},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.16840675473213196},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12082910537719727}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:HAL:hal-04679654v1","is_oa":true,"landing_page_url":"https://cnam.hal.science/hal-04679654","pdf_url":"https://cnam.hal.science/hal-04679654/document","source":{"id":"https://openalex.org/S4406922461","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://diglib.eg.org/handle/10.2312/3dor20241173","raw_type":"Conference papers"},{"id":"doi:10.2312/3dor.20241173","is_oa":true,"landing_page_url":"https://doi.org/10.2312/3dor.20241173","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":""}],"best_oa_location":{"id":"pmh:oai:HAL:hal-04679654v1","is_oa":true,"landing_page_url":"https://cnam.hal.science/hal-04679654","pdf_url":"https://cnam.hal.science/hal-04679654/document","source":{"id":"https://openalex.org/S4406922461","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://diglib.eg.org/handle/10.2312/3dor20241173","raw_type":"Conference papers"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1159432","display_name":null,"funder_award_id":"3R01GM133840-02S1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1337025033","display_name":"Collaborative Research: RoL:  Revealing a new mechanism of action for eukaryotic transcriptional activation domains","funder_award_id":"1925643","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3698960189","display_name":"IIBR Informatics: Development of Multimodal approaches for protein function prediction","funder_award_id":"2003635","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4202522359","display_name":null,"funder_award_id":"R01GM123055","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4924233558","display_name":"Nanomanufacturing of Protein Macromolecular Frameworks Through an Integrated Bioengineering and Computational Approach","funder_award_id":"1825941","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5004496696","display_name":null,"funder_award_id":"DBI2146026","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5601722728","display_name":null,"funder_award_id":"CMMI1825941","funder_id":"https://openalex.org/F4320337391","funder_display_name":"Division of Civil, Mechanical and Manufacturing Innovation"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7241072156","display_name":null,"funder_award_id":"MCB1925643","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7346127582","display_name":null,"funder_award_id":"R01GM133840","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7911151596","display_name":null,"funder_award_id":"DBI2003635","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8448981964","display_name":"Collaborative Research: Identification and Structural Modeling of Intrinsically Disordered Protein-Protein and Protein-Nucleic Acids Interactions","funder_award_id":"2146026","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309036","display_name":"Purdue University","ror":"https://ror.org/02dqehb95"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337391","display_name":"Division of Civil, Mechanical and Manufacturing Innovation","ror":"https://ror.org/028yd4c30"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402148324.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2099982459","https://openalex.org/W2109298101","https://openalex.org/W2007507741","https://openalex.org/W2159860826","https://openalex.org/W3192210502","https://openalex.org/W1981737222","https://openalex.org/W1569394480","https://openalex.org/W1998222399"],"abstract_inverted_index":{"The":[0,37],"aim":[1],"of":[2,22,59,63,69,101,121,123,148,161,168],"this":[3,41,64,131],"SHREC":[4],"2024":[5],"track":[6],"is":[7,43,55,66],"to":[8,85,97,136],"compare":[9],"different":[10],"algorithms":[11],"for":[12,40,50],"retrieving":[13],"non-rigid":[14],"complementary":[15],"shape":[16,156],"pairs,":[17],"applied":[18],"in":[19,78,117,130,158,164],"the":[20,60,67,70,74,79,87,99,102,118,138,154,159],"context":[21,167],"3D":[23],"objects":[24],"being":[25],"more":[26],"complex":[27],"(e.g.":[28],"with":[29],"many":[30],"folds":[31],"and":[32,93,96,109,133,146],"roughness)":[33],"such":[34],"as":[35],"proteins.":[36],"dataset":[38],"used":[39,84,116],"benchmark":[42],"based":[44,151],"on":[45,153],"52":[46],"selected":[47],"protein-protein":[48,169],"complexes":[49],"which":[51],"an":[52],"experimental":[53],"structure":[54],"publicly":[56],"available.":[57],"One":[58],"main":[61],"difficulties":[62],"challenge":[65,132],"non-inclusion":[68],"shapes":[71],"derived":[72],"from":[73],"ground":[75],"truth":[76],"conformations":[77],"dataset.":[80],"Different":[81],"metrics":[82,113],"were":[83,134],"evaluate":[86,98],"retrieval":[88,149],"performance":[89],"(nearest-neighbor,":[90],"first-tier,":[91],"second-tier,":[92],"true":[94],"positives)":[95],"quality":[100],"predicted":[103],"poses":[104],"(TM-score,":[105],"lDDT,":[106],"ICS,":[107],"IPS":[108],"DockQ":[110],"-":[111],"those":[112],"are":[114],"classically":[115],"Critical":[119],"Assessment":[120],"PRediction":[122],"Interactions":[124],"challenges).":[125],"Two":[126],"teams":[127],"took":[128],"part":[129],"able":[135],"return":[137],"expected":[139],"results.":[140],"This":[141],"paper":[142],"discusses":[143],"these":[144],"results":[145],"prospects":[147],"methods":[150],"only":[152],"protein":[155],"information":[157],"absence":[160],"atomic":[162],"data,":[163],"a":[165],"large":[166],"docking.":[170]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
