{"id":"https://openalex.org/W2947698700","doi":"https://doi.org/10.2312/3dor.20191058","title":"Protein Shape Retrieval Contest","display_name":"Protein Shape Retrieval Contest","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2947698700","doi":"https://doi.org/10.2312/3dor.20191058","mag":"2947698700"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:3258081","is_oa":true,"landing_page_url":"https://zenodo.org/record/3258081","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"},"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/3258081","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051148927","display_name":"Florent Langenfeld","orcid":"https://orcid.org/0000-0002-3184-3401"},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Langenfeld, Florent","raw_affiliation_strings":["Conservatoire National des Arts et M\u00e9tiers, Paris, France"],"affiliations":[{"raw_affiliation_string":"Conservatoire National des Arts et M\u00e9tiers, Paris, France","institution_ids":["https://openalex.org/I124158823"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045653630","display_name":"\u0391\u03c0\u03cc\u03c3\u03c4\u03bf\u03bb\u03bf\u03c2 \u0391\u03be\u03b5\u03bd\u03cc\u03c0\u03bf\u03c5\u03bb\u03bf\u03c2","orcid":"https://orcid.org/0000-0001-8314-4242"},"institutions":[{"id":"https://openalex.org/I107613613","display_name":"Information Technology Institute","ror":"https://ror.org/04ynw2g14","country_code":"EG","type":"facility","lineage":["https://openalex.org/I107613613"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Axenopoulos, Apostolos","raw_affiliation_strings":["Information Technology Institute, Cairo, Egypt"],"affiliations":[{"raw_affiliation_string":"Information Technology Institute, Cairo, Egypt","institution_ids":["https://openalex.org/I107613613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083824127","display_name":"Halim Benhabiles","orcid":"https://orcid.org/0000-0003-2950-5312"},"institutions":[{"id":"https://openalex.org/I3132279224","display_name":"Institut Sup\u00e9rieur de l'\u00c9lectronique et du Num\u00e9rique","ror":"https://ror.org/017h2rd72","country_code":"FR","type":"education","lineage":["https://openalex.org/I3132279224"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Benhabiles, Halim","raw_affiliation_strings":["Institut Sup\u00e9rieur de l'\u00c9lectronique et du Num\u00e9rique, Lille, France"],"affiliations":[{"raw_affiliation_string":"Institut Sup\u00e9rieur de l'\u00c9lectronique et du Num\u00e9rique, Lille, France","institution_ids":["https://openalex.org/I3132279224"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071585254","display_name":"Petros Daras","orcid":"https://orcid.org/0000-0003-3814-6710"},"institutions":[{"id":"https://openalex.org/I107613613","display_name":"Information Technology Institute","ror":"https://ror.org/04ynw2g14","country_code":"EG","type":"facility","lineage":["https://openalex.org/I107613613"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Daras, Petros","raw_affiliation_strings":["Information Technology Institute, Cairo, Egypt"],"affiliations":[{"raw_affiliation_string":"Information Technology Institute, Cairo, Egypt","institution_ids":["https://openalex.org/I107613613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056042099","display_name":"Andrea Giachetti","orcid":"https://orcid.org/0000-0002-7523-6806"},"institutions":[{"id":"https://openalex.org/I119439378","display_name":"University of Verona","ror":"https://ror.org/039bp8j42","country_code":"IT","type":"education","lineage":["https://openalex.org/I119439378"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giachetti, Andrea","raw_affiliation_strings":["University of Verona, Verona, Italy"],"affiliations":[{"raw_affiliation_string":"University of Verona, Verona, Italy","institution_ids":["https://openalex.org/I119439378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109397036","display_name":"Xusi Han","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Han, Xusi","raw_affiliation_strings":["Purdue University West Lafayette, West Lafayette, United States"],"affiliations":[{"raw_affiliation_string":"Purdue University West Lafayette, West Lafayette, United States","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051025413","display_name":"Karim Hammoudi","orcid":"https://orcid.org/0000-0002-4804-4796"},"institutions":[{"id":"https://openalex.org/I2800745255","display_name":"Universit\u00e9 de Haute-Alsace","ror":"https://ror.org/04k8k6n84","country_code":"FR","type":"education","lineage":["https://openalex.org/I2800745255"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Hammoudi, Karim","raw_affiliation_strings":["Universit\u00e9 de Haute-Alsace, Mulhouse, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Haute-Alsace, Mulhouse, France","institution_ids":["https://openalex.org/I2800745255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062293219","display_name":"Daisuke Kihara","orcid":"https://orcid.org/0000-0003-4091-6614"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kihara, Daisuke","raw_affiliation_strings":["Purdue University West Lafayette, West Lafayette, United States"],"affiliations":[{"raw_affiliation_string":"Purdue University West Lafayette, West Lafayette, United States","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036250098","display_name":"Tuan Lai","orcid":"https://orcid.org/0000-0002-1903-6674"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lai, Tuan M.","raw_affiliation_strings":["Purdue University West Lafayette, West Lafayette, United States"],"affiliations":[{"raw_affiliation_string":"Purdue University West Lafayette, West Lafayette, United States","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072407378","display_name":"Haiguang Liu","orcid":"https://orcid.org/0000-0001-7324-6632"},"institutions":[{"id":"https://openalex.org/I2801345734","display_name":"China Academy of Engineering Physics","ror":"https://ror.org/039vqpp67","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2801345734"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liu, Haiguang","raw_affiliation_strings":["China Academy of Engineering Physics, Mianyang, China"],"affiliations":[{"raw_affiliation_string":"China Academy of Engineering Physics, Mianyang, China","institution_ids":["https://openalex.org/I2801345734"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028394511","display_name":"Mahmoud Melkemi","orcid":"https://orcid.org/0000-0002-9045-9047"},"institutions":[{"id":"https://openalex.org/I2800745255","display_name":"Universit\u00e9 de Haute-Alsace","ror":"https://ror.org/04k8k6n84","country_code":"FR","type":"education","lineage":["https://openalex.org/I2800745255"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Melkemi, Mahmoud","raw_affiliation_strings":["Universit\u00e9 de Haute-Alsace, Mulhouse, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Haute-Alsace, Mulhouse, France","institution_ids":["https://openalex.org/I2800745255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046296679","display_name":"Stelios Mylonas","orcid":"https://orcid.org/0000-0003-2110-3618"},"institutions":[{"id":"https://openalex.org/I107613613","display_name":"Information Technology Institute","ror":"https://ror.org/04ynw2g14","country_code":"EG","type":"facility","lineage":["https://openalex.org/I107613613"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Mylonas, Stelios K.","raw_affiliation_strings":["Information Technology Institute, Cairo, Egypt"],"affiliations":[{"raw_affiliation_string":"Information Technology Institute, Cairo, Egypt","institution_ids":["https://openalex.org/I107613613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067994741","display_name":"Genki Terashi","orcid":"https://orcid.org/0000-0002-5339-909X"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Terashi, Genki","raw_affiliation_strings":["Purdue University West Lafayette, West Lafayette, United States"],"affiliations":[{"raw_affiliation_string":"Purdue University West Lafayette, West Lafayette, United States","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100679749","display_name":"Yufan Wang","orcid":"https://orcid.org/0009-0000-5306-6749"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Yufan","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111335110","display_name":"F\u00e9ryal Windal","orcid":null},"institutions":[{"id":"https://openalex.org/I3132279224","display_name":"Institut Sup\u00e9rieur de l'\u00c9lectronique et du Num\u00e9rique","ror":"https://ror.org/017h2rd72","country_code":"FR","type":"education","lineage":["https://openalex.org/I3132279224"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Windal, Feryal","raw_affiliation_strings":["Institut Sup\u00e9rieur de l'\u00c9lectronique et du Num\u00e9rique, Lille, France"],"affiliations":[{"raw_affiliation_string":"Institut Sup\u00e9rieur de l'\u00c9lectronique et du Num\u00e9rique, Lille, France","institution_ids":["https://openalex.org/I3132279224"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087675495","display_name":"Matthieu Mont\u00e8s","orcid":"https://orcid.org/0000-0001-5921-460X"},"institutions":[{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Montes, Matthieu","raw_affiliation_strings":["Universit\u00e9 Paris Cit\u00e9, Paris, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I204730241"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":16,"corresponding_author_ids":["https://openalex.org/A5051148927"],"corresponding_institution_ids":["https://openalex.org/I124158823"],"apc_list":null,"apc_paid":null,"fwci":0.5138,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.64324836,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"25","last_page":"31"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9505000114440918,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9505000114440918,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/contest","display_name":"CONTEST","score":0.7642011046409607},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.565297544002533},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3478511869907379},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.06513959169387817}],"concepts":[{"id":"https://openalex.org/C2777582232","wikidata":"https://www.wikidata.org/wiki/Q5013414","display_name":"CONTEST","level":2,"score":0.7642011046409607},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.565297544002533},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3478511869907379},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.06513959169387817},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:zenodo.org:3258081","is_oa":true,"landing_page_url":"https://zenodo.org/record/3258081","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"},{"id":"doi:10.2312/3dor.20191058","is_oa":true,"landing_page_url":"https://doi.org/10.2312/3dor.20191058","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"mag:2947698700","is_oa":false,"landing_page_url":"https://dblp.uni-trier.de/db/conf/3dor/3dor2019.html#LangenfeldABDGH19","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Eurographics","raw_type":null}],"best_oa_location":{"id":"pmh:oai:zenodo.org:3258081","is_oa":true,"landing_page_url":"https://zenodo.org/record/3258081","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2346236014","https://openalex.org/W2182072554","https://openalex.org/W2329437719","https://openalex.org/W2292401240","https://openalex.org/W164200328","https://openalex.org/W371940450","https://openalex.org/W2998776543","https://openalex.org/W2002414696","https://openalex.org/W2895862464","https://openalex.org/W2807874317","https://openalex.org/W3179116217","https://openalex.org/W1985907147","https://openalex.org/W3150475528","https://openalex.org/W2568554296","https://openalex.org/W2539239994","https://openalex.org/W156274329","https://openalex.org/W2783370904","https://openalex.org/W1592458933","https://openalex.org/W2974314921","https://openalex.org/W2784823664"],"abstract_inverted_index":{"This":[0],"track":[1,35],"aimed":[2],"at":[3,100],"retrieving":[4],"protein":[5],"evolutionary":[6],"classification":[7],"based":[8],"on":[9,124],"their":[10,30,54],"surfaces":[11],"meshes":[12],"only.":[13],"Given":[14],"that":[15,22],"proteins":[16,68,74,128],"are":[17],"dynamic,":[18],"non-rigid":[19],"objects":[20],"and":[21,32,52,69,79],"evolution":[23],"tends":[24],"to":[25,29,62,88,127],"conserve":[26],"patterns":[27],"related":[28],"activity":[31],"function,":[33],"this":[34],"offers":[36],"a":[37,57,90],"challenging":[38],"issue":[39],"using":[40],"biologically":[41],"relevant":[42],"molecules.":[43],"We":[44],"evaluated":[45],"the":[46,81,93,97,104,108,130],"performance":[47],"of":[48,59,66,72,92,103],"5":[49],"different":[50,77],"algorithms":[51],"analyzed":[53],"ability,":[55],"over":[56],"dataset":[58],"5,298":[60],"objects,":[61],"retrieve":[63,89],"various":[64,70],"conformations":[65,71],"identical":[67],"ortholog":[73],"(proteins":[75],"from":[76],"organisms":[78],"showing":[80],"same":[82,94],"activity).":[83],"All":[84],"methods":[85],"were":[86,118],"able":[87],"member":[91],"class":[95],"as":[96],"query":[98],"in":[99],"least":[101],"94%":[102],"cases":[105],"when":[106,115],"considering":[107],"first":[109],"match,":[110],"but":[111],"show":[112],"more":[113,116],"divergent":[114],"matches":[117],"considered.":[119],"Last,":[120],"similarity":[121],"metrics":[122],"trained":[123],"databases":[125],"dedicated":[126],"improved":[129],"results.":[131]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
