{"id":"https://openalex.org/W2475822380","doi":"https://doi.org/10.2312/3dor.20161083","title":"An Experimental Shape Matching Approach for Protein Docking","display_name":"An Experimental Shape Matching Approach for Protein Docking","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2475822380","doi":"https://doi.org/10.2312/3dor.20161083","mag":"2475822380"},"language":"en","primary_location":{"id":"doi:10.2312/3dor.20161083","is_oa":true,"landing_page_url":"https://doi.org/10.2312/3dor.20161083","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"type":"other","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.2312/3dor.20161083","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058255492","display_name":"Francisco Fernandes","orcid":"https://orcid.org/0000-0003-2546-2669"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Fernandes, Francisco","raw_affiliation_strings":["INESC-ID, Lisbon, Portugal and ITQB, Oeiras, Portugal#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INESC-ID, Lisbon, Portugal and ITQB, Oeiras, Portugal#TAB#","institution_ids":["https://openalex.org/I121345201"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091563141","display_name":"Alfredo Ferreira","orcid":"https://orcid.org/0000-0001-9278-142X"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Ferreira, Alfredo","raw_affiliation_strings":["INESC-ID, Lisbon, Portugal and Universidade T\u00e9cnica de Lisboa, Lisbon, Portugal#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INESC-ID, Lisbon, Portugal and Universidade T\u00e9cnica de Lisboa, Lisbon, Portugal#TAB#","institution_ids":["https://openalex.org/I121345201"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I121345201"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9779999852180481,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6102423071861267},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.5816372632980347},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.47173061966896057},{"id":"https://openalex.org/keywords/partition","display_name":"Partition (number theory)","score":0.4218067228794098},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.4170444905757904},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.39476704597473145},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3847965598106384},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1811905801296234},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.13710179924964905},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12097442150115967}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6102423071861267},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.5816372632980347},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.47173061966896057},{"id":"https://openalex.org/C42812","wikidata":"https://www.wikidata.org/wiki/Q1082910","display_name":"Partition (number theory)","level":2,"score":0.4218067228794098},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.4170444905757904},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.39476704597473145},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3847965598106384},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1811905801296234},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.13710179924964905},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12097442150115967},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.2312/3dor.20161083","is_oa":true,"landing_page_url":"https://doi.org/10.2312/3dor.20161083","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.2312/3dor.20161083","is_oa":true,"landing_page_url":"https://doi.org/10.2312/3dor.20161083","pdf_url":null,"source":{"id":"https://openalex.org/S7407052899","display_name":"Eurographics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"sustainable_development_goals":[{"score":0.6000000238418579,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1255705275","https://openalex.org/W1521042556","https://openalex.org/W1986240377","https://openalex.org/W2000383223","https://openalex.org/W2004360551","https://openalex.org/W2074954154","https://openalex.org/W2100025509","https://openalex.org/W2105668062","https://openalex.org/W2111387452","https://openalex.org/W2115879729","https://openalex.org/W2133712572","https://openalex.org/W2144071905","https://openalex.org/W2153983456","https://openalex.org/W2171249995"],"related_works":["https://openalex.org/W2398838040","https://openalex.org/W2363533051","https://openalex.org/W1995405792","https://openalex.org/W2097415325","https://openalex.org/W2343385447","https://openalex.org/W2293773755","https://openalex.org/W3205009373","https://openalex.org/W2112880212","https://openalex.org/W2564527491","https://openalex.org/W2165951445","https://openalex.org/W2168771843","https://openalex.org/W2564629822","https://openalex.org/W2096177713","https://openalex.org/W2158878652","https://openalex.org/W2058099083","https://openalex.org/W1995373990","https://openalex.org/W2425260901","https://openalex.org/W2117204774","https://openalex.org/W2542163750","https://openalex.org/W2567048663"],"abstract_inverted_index":{"Proteins":[0],"play":[1],"a":[2,23,59,72,119],"vital":[3],"role":[4],"in":[5,89],"biological":[6],"processes,":[7],"with":[8],"their":[9,15],"function":[10],"being":[11],"largely":[12],"determined":[13],"by":[14,104,114],"structure.":[16],"It":[17],"is":[18,34],"important":[19],"to":[20,43,77,97,124],"know":[21],"what":[22,33],"protein":[24],"binds,":[25,28,31],"where":[26],"it":[27,30],"how":[29],"and":[32,62,117,121],"its":[35],"final":[36],"conformation.":[37],"Several":[38],"methodologies":[39],"have":[40],"been":[41],"applied":[42],"solve":[44],"this":[45,58,68],"complex":[46],"protein-protein":[47],"docking":[48],"problem,":[49,69],"but":[50],"the":[51,79,83,90,100,112,128],"number":[52],"of":[53,55,82,127,130],"degrees":[54],"freedom":[56],"renders":[57],"very":[60],"slow":[61],"computationally":[63],"heavy":[64],"challenge.":[65],"To":[66],"handle":[67],"we":[70,94,109],"propose":[71],"multi-level":[73],"space":[74],"partition":[75],"approach":[76],"describe":[78],"three-dimensional":[80],"shape":[81],"protein.":[84],"By":[85],"combining":[86],"two":[87],"proteins":[88],"same":[91],"data":[92],"structure":[93],"are":[95],"able":[96],"easily":[98],"detect":[99],"shape-complementary":[101],"regions.":[102],"Moreover,":[103],"directly":[105],"integrating":[106],"bio-energetic":[107],"information,":[108],"can":[110],"drive":[111],"algorithm":[113],"both":[115],"parameters":[116],"provide":[118],"fast":[120],"efficient":[122],"way":[123],"overcome":[125],"some":[126],"limitations":[129],"previous":[131],"approaches.":[132]},"counts_by_year":[],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
