{"id":"https://openalex.org/W4398173010","doi":"https://doi.org/10.2298/csis230530027g","title":"A comprehensive review of the data and knowledge graphs approaches in bioinformatics","display_name":"A comprehensive review of the data and knowledge graphs approaches in bioinformatics","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4398173010","doi":"https://doi.org/10.2298/csis230530027g"},"language":"en","primary_location":{"id":"doi:10.2298/csis230530027g","is_oa":true,"landing_page_url":"https://doi.org/10.2298/csis230530027g","pdf_url":"http://www.doiserbia.nb.rs/ft.aspx?id=1820-02142400027G","source":{"id":"https://openalex.org/S206939107","display_name":"Computer Science and Information Systems","issn_l":"1820-0214","issn":["1820-0214","2406-1018"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310321031","host_organization_name":"ComSIS Consortium","host_organization_lineage":["https://openalex.org/P4310321031"],"host_organization_lineage_names":["ComSIS Consortium"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Science and Information Systems","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"http://www.doiserbia.nb.rs/ft.aspx?id=1820-02142400027G","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012555693","display_name":"Ylenia Galluzzo","orcid":null},"institutions":[{"id":"https://openalex.org/I900890020","display_name":"University of Palermo","ror":"https://ror.org/044k9ta02","country_code":"IT","type":"education","lineage":["https://openalex.org/I900890020"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Ylenia Galluzzo","raw_affiliation_strings":["Department of Engineering, University of Palermo, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Engineering, University of Palermo, Italy","institution_ids":["https://openalex.org/I900890020"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5012555693"],"corresponding_institution_ids":["https://openalex.org/I900890020"],"apc_list":null,"apc_paid":null,"fwci":0.9101,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.72936647,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"21","issue":"3","first_page":"1055","last_page":"1075"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9747999906539917,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9747999906539917,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.949400007724762,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8585644960403442},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5038914084434509},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3670961260795593},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32264477014541626},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.04419755935668945}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8585644960403442},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5038914084434509},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3670961260795593},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32264477014541626},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.04419755935668945}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.2298/csis230530027g","is_oa":true,"landing_page_url":"https://doi.org/10.2298/csis230530027g","pdf_url":"http://www.doiserbia.nb.rs/ft.aspx?id=1820-02142400027G","source":{"id":"https://openalex.org/S206939107","display_name":"Computer Science and Information Systems","issn_l":"1820-0214","issn":["1820-0214","2406-1018"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310321031","host_organization_name":"ComSIS Consortium","host_organization_lineage":["https://openalex.org/P4310321031"],"host_organization_lineage_names":["ComSIS Consortium"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Science and Information Systems","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.2298/csis230530027g","is_oa":true,"landing_page_url":"https://doi.org/10.2298/csis230530027g","pdf_url":"http://www.doiserbia.nb.rs/ft.aspx?id=1820-02142400027G","source":{"id":"https://openalex.org/S206939107","display_name":"Computer Science and Information Systems","issn_l":"1820-0214","issn":["1820-0214","2406-1018"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310321031","host_organization_name":"ComSIS Consortium","host_organization_lineage":["https://openalex.org/P4310321031"],"host_organization_lineage_names":["ComSIS Consortium"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Science and Information Systems","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4398173010.pdf"},"referenced_works_count":125,"referenced_works":["https://openalex.org/W102708294","https://openalex.org/W150699991","https://openalex.org/W1490161904","https://openalex.org/W1505770165","https://openalex.org/W1700570096","https://openalex.org/W1757990252","https://openalex.org/W1935434993","https://openalex.org/W1968319881","https://openalex.org/W1981276685","https://openalex.org/W1982390234","https://openalex.org/W1988037271","https://openalex.org/W1994127362","https://openalex.org/W2009313526","https://openalex.org/W2010798628","https://openalex.org/W2016753842","https://openalex.org/W2017426710","https://openalex.org/W2022847609","https://openalex.org/W2034537627","https://openalex.org/W2035192299","https://openalex.org/W2035585923","https://openalex.org/W2040191060","https://openalex.org/W2043764521","https://openalex.org/W2053039860","https://openalex.org/W2081580037","https://openalex.org/W2096541451","https://openalex.org/W2099754222","https://openalex.org/W2103151642","https://openalex.org/W2119002393","https://openalex.org/W2122863289","https://openalex.org/W2122915854","https://openalex.org/W2133658633","https://openalex.org/W2145578524","https://openalex.org/W2148145769","https://openalex.org/W2152772232","https://openalex.org/W2154139219","https://openalex.org/W2158485828","https://openalex.org/W2159092541","https://openalex.org/W2159482845","https://openalex.org/W2159583324","https://openalex.org/W2177317049","https://openalex.org/W2204695023","https://openalex.org/W2226877337","https://openalex.org/W2294516783","https://openalex.org/W2396881363","https://openalex.org/W2484867948","https://openalex.org/W2558715006","https://openalex.org/W2605089588","https://openalex.org/W2606882994","https://openalex.org/W2613482391","https://openalex.org/W2614443510","https://openalex.org/W2624988670","https://openalex.org/W2757038198","https://openalex.org/W2759136286","https://openalex.org/W2781216040","https://openalex.org/W2781816753","https://openalex.org/W2786016794","https://openalex.org/W2897583676","https://openalex.org/W2898210859","https://openalex.org/W2899292521","https://openalex.org/W2907510403","https://openalex.org/W2908230750","https://openalex.org/W2916047525","https://openalex.org/W2949311246","https://openalex.org/W2962756421","https://openalex.org/W2962772482","https://openalex.org/W2962876161","https://openalex.org/W2968353232","https://openalex.org/W2995225687","https://openalex.org/W2997704374","https://openalex.org/W2998922495","https://openalex.org/W3004611733","https://openalex.org/W3007352422","https://openalex.org/W3007807538","https://openalex.org/W3015409108","https://openalex.org/W3021393704","https://openalex.org/W3035011799","https://openalex.org/W3048090444","https://openalex.org/W3091866222","https://openalex.org/W3096568637","https://openalex.org/W3102245839","https://openalex.org/W3104658975","https://openalex.org/W3105895642","https://openalex.org/W3106745904","https://openalex.org/W3107527779","https://openalex.org/W3111386522","https://openalex.org/W3112600195","https://openalex.org/W3116099552","https://openalex.org/W3121095945","https://openalex.org/W3136296618","https://openalex.org/W3136918052","https://openalex.org/W3162048269","https://openalex.org/W3175988714","https://openalex.org/W3188579603","https://openalex.org/W3189802099","https://openalex.org/W3194243418","https://openalex.org/W3208182228","https://openalex.org/W3211402536","https://openalex.org/W3213921583","https://openalex.org/W3214608846","https://openalex.org/W3215918380","https://openalex.org/W4200043367","https://openalex.org/W4206334877","https://openalex.org/W4210493972","https://openalex.org/W4210870577","https://openalex.org/W4214932602","https://openalex.org/W4220788456","https://openalex.org/W4282593722","https://openalex.org/W4283811023","https://openalex.org/W4285194159","https://openalex.org/W4285268663","https://openalex.org/W4286373989","https://openalex.org/W4293657442","https://openalex.org/W4294000785","https://openalex.org/W4295198017","https://openalex.org/W4308616064","https://openalex.org/W4312827643","https://openalex.org/W4320525813","https://openalex.org/W4324116360","https://openalex.org/W4376870972","https://openalex.org/W6600238479","https://openalex.org/W6601760687","https://openalex.org/W6602311867","https://openalex.org/W6606425255","https://openalex.org/W6636383161","https://openalex.org/W6776225533"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2382290278","https://openalex.org/W4395014643"],"abstract_inverted_index":{"The":[0,19],"scientific":[1],"community":[2],"is":[3,23,69],"currently":[4],"showing":[5,71],"strong":[6],"interest":[7],"in":[8,27,110],"constructing":[9],"knowledge":[10,60,79,139],"graphs":[11,140],"from":[12,62],"heterogeneous":[13],"domains":[14],"(genomic,":[15],"pharmaceutical,":[16],"clinical":[17,36,67],"etc.).":[18],"main":[20],"goal":[21],"here":[22],"to":[24,42,65,102,119],"support":[25],"researchers":[26,109],"gaining":[28],"an":[29],"immediate":[30],"overview":[31,49,106],"of":[32,50,59,76,137,144,146],"the":[33,51,56,63,66,72,112,120,131,142],"biomedical":[34,53,78,87],"and":[35,44,55,107,126,141],"data":[37,54,127],"that":[38],"can":[39],"be":[40],"utilized":[41],"construct":[43],"extend":[45],"KGs.":[46],"A":[47],"in-depth":[48],"available":[52,124],"latest":[57],"applications":[58],"graphs,":[61],"biological":[64],"context,":[68],"provided":[70],"most":[73],"recent":[74],"methods":[75],"representing":[77],"with":[80],"embeddings":[81],"(KGEs).":[82],"Furthermore,":[83],"this":[84],"review,":[85],"differentiates":[86],"databases":[88],"based":[89],"on":[90],"their":[91,116],"construction":[92],"process":[93],"(whether":[94],"manually":[95],"curated":[96],"by":[97],"experts":[98],"or":[99],"not),":[100],"aiming":[101],"offer":[103],"a":[104],"detailed":[105],"guide":[108],"selecting":[111],"appropriate":[113],"database":[114],"for":[115],"research":[117],"considering":[118],"specific":[121],"project":[122],"needs,":[123],"resources,":[125],"complexity.":[128],"In":[129],"conclusion,":[130],"review":[132],"highlights":[133],"current":[134],"challenges:":[135],"integration":[136],"different":[138],"interpretability":[143],"predictions":[145],"new":[147],"relations.":[148]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
