{"id":"https://openalex.org/W6944657093","doi":"https://doi.org/10.21227/ya12-j913","title":"TbImages: a smear microscopy image dataset to support the development of automated bacilli detection in the diagnosis of tuberculosis","display_name":"TbImages: a smear microscopy image dataset to support the development of automated bacilli detection in the diagnosis of tuberculosis","publication_year":2022,"publication_date":"2022-11-28","ids":{"openalex":"https://openalex.org/W6944657093","doi":"https://doi.org/10.21227/ya12-j913"},"language":"en","primary_location":{"id":"doi:10.21227/ya12-j913","is_oa":true,"landing_page_url":"https://doi.org/10.21227/ya12-j913","pdf_url":null,"source":{"id":"https://openalex.org/S7407051695","display_name":"IEEE DataPort","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.21227/ya12-j913","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Marly G F , Costa","orcid":null},"institutions":[{"id":"https://openalex.org/I62885914","display_name":"Universidade Federal do Amazonas","ror":"https://ror.org/02263ky35","country_code":"BR","type":"education","lineage":["https://openalex.org/I62885914"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Marly G F , Costa","raw_affiliation_strings":["UFAM- FEDERAL UNIVERSITY OF AMAZONAS"],"affiliations":[{"raw_affiliation_string":"UFAM- FEDERAL UNIVERSITY OF AMAZONAS","institution_ids":["https://openalex.org/I62885914"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Cicero F F, Costa Filho","orcid":null},"institutions":[{"id":"https://openalex.org/I62885914","display_name":"Universidade Federal do Amazonas","ror":"https://ror.org/02263ky35","country_code":"BR","type":"education","lineage":["https://openalex.org/I62885914"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Cicero F F, Costa Filho","raw_affiliation_strings":["UFAM- FEDERAL UNIVERSITY OF AMAZONAS"],"affiliations":[{"raw_affiliation_string":"UFAM- FEDERAL UNIVERSITY OF AMAZONAS","institution_ids":["https://openalex.org/I62885914"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Luciana B, Fujimoto","orcid":null},"institutions":[{"id":"https://openalex.org/I62885914","display_name":"Universidade Federal do Amazonas","ror":"https://ror.org/02263ky35","country_code":"BR","type":"education","lineage":["https://openalex.org/I62885914"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Luciana B, Fujimoto","raw_affiliation_strings":["UFAM- FEDERAL UNIVERSITY OF AMAZONAS"],"affiliations":[{"raw_affiliation_string":"UFAM- FEDERAL UNIVERSITY OF AMAZONAS","institution_ids":["https://openalex.org/I62885914"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Pamela C, Levy","orcid":null},"institutions":[{"id":"https://openalex.org/I62885914","display_name":"Universidade Federal do Amazonas","ror":"https://ror.org/02263ky35","country_code":"BR","type":"education","lineage":["https://openalex.org/I62885914"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Pamela C, Levy","raw_affiliation_strings":["UFAM- FEDERAL UNIVERSITY OF AMAZONAS"],"affiliations":[{"raw_affiliation_string":"UFAM- FEDERAL UNIVERSITY OF AMAZONAS","institution_ids":["https://openalex.org/I62885914"]}]},{"author_position":"last","author":{"id":null,"display_name":"Clahildek M, Xavier","orcid":null},"institutions":[{"id":"https://openalex.org/I62885914","display_name":"Universidade Federal do Amazonas","ror":"https://ror.org/02263ky35","country_code":"BR","type":"education","lineage":["https://openalex.org/I62885914"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Clahildek M, Xavier","raw_affiliation_strings":["UFAM- FEDERAL UNIVERSITY OF AMAZONAS"],"affiliations":[{"raw_affiliation_string":"UFAM- FEDERAL UNIVERSITY OF AMAZONAS","institution_ids":["https://openalex.org/I62885914"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I62885914"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/sputum","display_name":"Sputum","score":0.6126999855041504},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.5601999759674072},{"id":"https://openalex.org/keywords/autofocus","display_name":"Autofocus","score":0.5234000086784363},{"id":"https://openalex.org/keywords/magnification","display_name":"Magnification","score":0.48260000348091125},{"id":"https://openalex.org/keywords/microscope","display_name":"Microscope","score":0.4763999879360199},{"id":"https://openalex.org/keywords/stain","display_name":"Stain","score":0.4634999930858612},{"id":"https://openalex.org/keywords/bacilli","display_name":"Bacilli","score":0.4016000032424927},{"id":"https://openalex.org/keywords/pixel","display_name":"Pixel","score":0.3837999999523163},{"id":"https://openalex.org/keywords/optical-microscope","display_name":"Optical microscope","score":0.382999986410141}],"concepts":[{"id":"https://openalex.org/C2776301714","wikidata":"https://www.wikidata.org/wiki/Q259346","display_name":"Sputum","level":3,"score":0.6126999855041504},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.5601999759674072},{"id":"https://openalex.org/C103764139","wikidata":"https://www.wikidata.org/wiki/Q210008","display_name":"Autofocus","level":3,"score":0.5234000086784363},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4999000132083893},{"id":"https://openalex.org/C4144372","wikidata":"https://www.wikidata.org/wiki/Q675287","display_name":"Magnification","level":2,"score":0.48260000348091125},{"id":"https://openalex.org/C67649825","wikidata":"https://www.wikidata.org/wiki/Q196538","display_name":"Microscope","level":2,"score":0.4763999879360199},{"id":"https://openalex.org/C2781294515","wikidata":"https://www.wikidata.org/wiki/Q2733470","display_name":"Stain","level":3,"score":0.4634999930858612},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.46059998869895935},{"id":"https://openalex.org/C2776870249","wikidata":"https://www.wikidata.org/wiki/Q149128","display_name":"Bacilli","level":3,"score":0.4016000032424927},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39149999618530273},{"id":"https://openalex.org/C160633673","wikidata":"https://www.wikidata.org/wiki/Q355198","display_name":"Pixel","level":2,"score":0.3837999999523163},{"id":"https://openalex.org/C77017923","wikidata":"https://www.wikidata.org/wiki/Q912313","display_name":"Optical microscope","level":3,"score":0.382999986410141},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.3637999892234802},{"id":"https://openalex.org/C2780029942","wikidata":"https://www.wikidata.org/wiki/Q7935138","display_name":"Virtual microscopy","level":2,"score":0.3589000105857849},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.3573000133037567},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3483000099658966},{"id":"https://openalex.org/C42781572","wikidata":"https://www.wikidata.org/wiki/Q1250322","display_name":"Digital image","level":4,"score":0.34279999136924744},{"id":"https://openalex.org/C2779705975","wikidata":"https://www.wikidata.org/wiki/Q62927","display_name":"Digital camera","level":2,"score":0.3312000036239624},{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.3118000030517578},{"id":"https://openalex.org/C14764753","wikidata":"https://www.wikidata.org/wiki/Q905225","display_name":"Bright-field microscopy","level":3,"score":0.31060001254081726},{"id":"https://openalex.org/C173163844","wikidata":"https://www.wikidata.org/wiki/Q1761440","display_name":"Multispectral image","level":2,"score":0.30809998512268066},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.3027999997138977},{"id":"https://openalex.org/C2989005","wikidata":"https://www.wikidata.org/wiki/Q214963","display_name":"Nuclear medicine","level":1,"score":0.2962000072002411},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.2928999960422516},{"id":"https://openalex.org/C189962949","wikidata":"https://www.wikidata.org/wiki/Q198921","display_name":"Ziehl\u2013Neelsen stain","level":5,"score":0.29010000824928284},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.2736999988555908},{"id":"https://openalex.org/C136229726","wikidata":"https://www.wikidata.org/wiki/Q327092","display_name":"Biomedical engineering","level":1,"score":0.273499995470047},{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.2718000113964081},{"id":"https://openalex.org/C101077360","wikidata":"https://www.wikidata.org/wiki/Q3278217","display_name":"Acid-fast","level":4,"score":0.2671000063419342},{"id":"https://openalex.org/C150627866","wikidata":"https://www.wikidata.org/wiki/Q1076893","display_name":"Field of view","level":2,"score":0.2612999975681305},{"id":"https://openalex.org/C2908628106","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Pulmonary tuberculosis","level":3,"score":0.26089999079704285},{"id":"https://openalex.org/C104317675","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Digital image processing","level":4,"score":0.2567000091075897},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.2533999979496002},{"id":"https://openalex.org/C2779549770","wikidata":"https://www.wikidata.org/wiki/Q1122413","display_name":"Computer-aided diagnosis","level":2,"score":0.25040000677108765}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.21227/ya12-j913","is_oa":true,"landing_page_url":"https://doi.org/10.21227/ya12-j913","pdf_url":null,"source":{"id":"https://openalex.org/S7407051695","display_name":"IEEE DataPort","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.21227/ya12-j913","is_oa":true,"landing_page_url":"https://doi.org/10.21227/ya12-j913","pdf_url":null,"source":{"id":"https://openalex.org/S7407051695","display_name":"IEEE DataPort","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"dataset"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"TbImages":[0],"-":[1,141],"An":[2,142],"image":[3,31,237,315],"database":[4],"of":[5,20,26,34,43,53,60,69,81,112,120,205,210,218,226,279,284,346],"conventional":[6],"sputum":[7,106],"smear":[8,72,87],"light":[9,152],"field":[10,221],"microscopy":[11,73,88],"for":[12,23],"tuberculosis&nbsp;In":[13],"order":[14],"to":[15,17,49,65,77,126,340,356],"contribute":[16],"the":[18,24,51,58,67,79,95,118,127,136,224,227,242,245,280,341,349],"development":[19,59,80],"automatic":[21,82],"methods":[22,64],"detection":[25,68],"bacilli,":[27],"TBimages":[28],"is":[29,124,241],"an":[30,303,312],"dataset":[32,249,258],"composed":[33],"two":[35],"subsets:":[36],"TbImages_SS1":[37],"contains":[38,215,250],"10":[39,219,264],"images":[40,180,222,225,255,272,278,350],"per":[41,189,266],"field,":[42],"different":[44,232],"focal":[45,233],"depths,":[46],"and":[47,56,99,154,186,207,288,311,344,364,366],"aims":[48],"support":[50,78],"definition":[52],"autofocus":[54],"metrics":[55],"also":[57],"extended":[61],"focus":[62,316],"imaging":[63],"facilitate":[66],"bacilli":[70,83,347,368],"in":[71,238,348],"imaging.&nbsp;":[74],"&nbsp;TbImages_SS2":[75],"&nbsp;aims":[76],"detection.":[84],"Materials:":[85],"Sputum":[86],"slides":[89],"from":[90,109,256,261],"12":[91,262],"patients":[92,110],"prepared":[93],"using":[94],"Kinyoun":[96,115],"acid-fast":[97],"stain":[98,116,129],"counterstained":[100],"with":[101,168,174,244],"methylene":[102],"blue":[103],"solution.":[104],"The":[105,157,179,193,235,254],"samples":[107],"are":[108],"suspected":[111],"pulmonary":[113],"TB.":[114],"was":[117,145,161,196,301,306,331],"method":[119],"staining":[121],"used.":[122],"It":[123,201],"similar":[125],"Ziehl-Neelsen":[128],"but":[130],"does":[131],"not":[132,320],"require":[133],"heating":[134],"unlike":[135],"Ziehl\u2013Neelsen":[137],"stain.&nbsp;":[138],"Image":[139],"acquisition":[140,143],"workstation":[144],"set":[146],"up":[147],"(a":[148],"digital":[149,158],"camera,":[150],"a":[151,155,162,169,175,197,203,239,291,295,309,322,326,334],"microscope,":[153],"computer).":[156],"camera":[159],"used":[160,195],"Canon":[163],"PowerShot":[164],"A640,":[165],"which":[166],"couples":[167],"10-megapixel":[170],"CCD":[171],"imager":[172],"sensor":[173],"4x":[176],"optical":[177],"zoom.":[178],"have":[181,351],"2816":[182],"x":[183],"2112":[184],"pixels":[185],"24":[187],"bits":[188],"pixel":[190],"(RGB":[191],"images).":[192],"microscope":[194,220],"Zeiss":[198],"Axioshop":[199],"40.":[200],"employed":[202],"magnification":[204],"100x":[206],"numerical":[208],"aperture":[209],"1.25.":[211],"TbImages_SS1:":[212],"This":[213,248],"subset":[214],"40":[216],"stacks":[217],"where":[223],"stack":[228,240],"were":[229,259,286],"acquired":[230],"at":[231],"depths.":[234],"fifth":[236],"one":[243],"best":[246],"focus.":[247],"400":[251],"images.":[252,270],"TbImages_SS2:":[253],"this":[257],"taken":[260],"slides,":[263],"fields":[265],"slide,":[267],"totaling":[268],"120":[269,277],"Annotated":[271],"(Gold":[273],"Standard):":[274],"In":[275,336],"all":[276],"TbImage_SS2":[281],"subset,":[282],"objects":[283],"interest":[285],"identified":[287],"delimited":[289],"within":[290],"geometric":[292],"shape":[293],"by":[294,308,333],"trained":[296],"technician.":[297],"A":[298],"true":[299],"bacillus":[300,305,327,329],"circled,":[302],"agglomerated":[304],"surrounded":[307,332],"rectangle":[310],"object":[313],"whose":[314],"or":[317,360],"geometry":[318],"did":[319],"allow":[321],"clear":[323],"identification":[324],"as":[325,354],"(doubtful":[328],")":[330],"polygon.":[335],"both":[337],"databases,":[338],"according":[339],"background":[342,358,362],"content,":[343,363],"density":[345],"been":[352],"grouped":[353],"belonging":[355],"high":[357,365],"content":[359],"low":[361,367],"density,":[369],"respectively.":[370],"More":[371],"information:":[372],"www.tbimages.ufam.edu.br":[373]},"counts_by_year":[],"updated_date":"2025-11-06T06:51:31.235846","created_date":"2025-10-10T00:00:00"}
