{"id":"https://openalex.org/W4290081977","doi":"https://doi.org/10.21105/joss.04368","title":"Open-Source Hypothalamic-ForniX (OSHy-X) Atlases andSegmentation Tool for 3T and 7T","display_name":"Open-Source Hypothalamic-ForniX (OSHy-X) Atlases andSegmentation Tool for 3T and 7T","publication_year":2022,"publication_date":"2022-08-05","ids":{"openalex":"https://openalex.org/W4290081977","doi":"https://doi.org/10.21105/joss.04368"},"language":"en","primary_location":{"id":"doi:10.21105/joss.04368","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.04368","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.04368.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://joss.theoj.org/papers/10.21105/joss.04368.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068654360","display_name":"Jeryn Chang","orcid":"https://orcid.org/0000-0002-6659-365X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Jeryn Chang","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-6659-365X","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038700827","display_name":"Frederik J. Steyn","orcid":"https://orcid.org/0000-0002-4782-3608"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Frederik Steyn","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-4782-3608","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017869363","display_name":"Shyuan T. Ngo","orcid":"https://orcid.org/0000-0002-1388-2108"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shyuan Ngo","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-1388-2108","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048588036","display_name":"Robert D. Henderson","orcid":"https://orcid.org/0000-0002-2820-8183"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Robert Henderson","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-2820-8183","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081230016","display_name":"Christine C. Guo","orcid":"https://orcid.org/0000-0003-1530-0172"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christine Guo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007006482","display_name":"Steffen Bollmann","orcid":"https://orcid.org/0000-0002-2909-0906"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Steffen Bollmann","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-2909-0906","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023809387","display_name":"J\u00fcrgen Fripp","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jurgen Fripp","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-9705-0079","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058316985","display_name":"Markus Barth","orcid":"https://orcid.org/0000-0002-0520-1843"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Markus Barth","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-0520-1843","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5039311373","display_name":"Thomas B. Shaw","orcid":"https://orcid.org/0000-0003-2490-0532"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thomas Shaw","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-2490-0532","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5068654360"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.8669,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.74794127,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"7","issue":"76","first_page":"4368","last_page":"4368"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10855","display_name":"Amyotrophic Lateral Sclerosis Research","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10855","display_name":"Amyotrophic Lateral Sclerosis Research","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12569","display_name":"Restless Legs Syndrome Research","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11097","display_name":"Cerebral Palsy and Movement Disorders","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/2738","display_name":"Psychiatry and Mental health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fornix","display_name":"Fornix","score":0.9798785448074341},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7601213455200195},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45589450001716614},{"id":"https://openalex.org/keywords/hypothalamus","display_name":"Hypothalamus","score":0.450188010931015},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.41774648427963257},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40974679589271545},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25642627477645874},{"id":"https://openalex.org/keywords/hippocampus","display_name":"Hippocampus","score":0.22063255310058594}],"concepts":[{"id":"https://openalex.org/C2778677889","wikidata":"https://www.wikidata.org/wiki/Q1230047","display_name":"Fornix","level":3,"score":0.9798785448074341},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7601213455200195},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45589450001716614},{"id":"https://openalex.org/C2777003273","wikidata":"https://www.wikidata.org/wiki/Q164386","display_name":"Hypothalamus","level":2,"score":0.450188010931015},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.41774648427963257},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40974679589271545},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25642627477645874},{"id":"https://openalex.org/C2781161787","wikidata":"https://www.wikidata.org/wiki/Q48360","display_name":"Hippocampus","level":2,"score":0.22063255310058594}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.21105/joss.04368","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.04368","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.04368.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.21105/joss.04368","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.04368","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.04368.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4177176191","display_name":null,"funder_award_id":"FT140100865","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G7205559365","display_name":null,"funder_award_id":"PDF2112","funder_id":"https://openalex.org/F4320316956","funder_display_name":"Motor Neurone Disease Research Australia"}],"funders":[{"id":"https://openalex.org/F4320314730","display_name":"FightMND","ror":null},{"id":"https://openalex.org/F4320315813","display_name":"Queensland Cyber Infrastructure Foundation","ror":"https://ror.org/03sd43014"},{"id":"https://openalex.org/F4320315914","display_name":"National Imaging Facility","ror":"https://ror.org/01kdbsa35"},{"id":"https://openalex.org/F4320316956","display_name":"Motor Neurone Disease Research Australia","ror":"https://ror.org/04es2gg88"},{"id":"https://openalex.org/F4320320984","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4290081977.pdf","grobid_xml":"https://content.openalex.org/works/W4290081977.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1970928383","https://openalex.org/W2004293194","https://openalex.org/W2148157540","https://openalex.org/W2622527277","https://openalex.org/W2802303920","https://openalex.org/W2976358595","https://openalex.org/W3080123676","https://openalex.org/W3136371291","https://openalex.org/W6925004377"],"related_works":["https://openalex.org/W2370334588","https://openalex.org/W2035499559","https://openalex.org/W2122025249","https://openalex.org/W2422869242","https://openalex.org/W1966083344","https://openalex.org/W1979775570","https://openalex.org/W2118416442","https://openalex.org/W1985131874","https://openalex.org/W2011939741","https://openalex.org/W2401986574"],"abstract_inverted_index":{"Segmentation":[0],"and":[1,7,34,42,67,73,106,116,122],"volumetric":[2,68],"analysis":[3,69],"of":[4,17,25,61,70,87,96,101],"the":[5,15,23,62,71,88,94],"hypothalamus":[6,72,89],"fornix":[8,74],"plays":[9],"a":[10,99],"critical":[11],"role":[12],"in":[13],"improving":[14],"understanding":[16],"degenerative":[18],"processes":[19],"that":[20,81],"might":[21],"impact":[22],"function":[24],"these":[26],"structures.":[27],"We":[28,78,90],"present":[29],"Open-Source":[30],"Hypothalamic-ForniX":[31],"(OSHy-X)":[32],"atlases":[33,45],"tool":[35,64],"for":[36,40],"multi-atlas":[37],"fusion":[38],"segmentation":[39,66,83,86],"3T":[41],"7T.":[43],"The":[44,59],"are":[46],"based":[47],"on":[48,98],"20":[49],"manual":[50],"segmentations,":[51],"which":[52],"we":[53],"demonstrate":[54,80],"have":[55,91],"high":[56],"interrater":[57],"agreement.":[58],"versatility":[60],"OSHy-X":[63,82,97],"allows":[65],"from":[75],"MRI":[76],"scans.":[77],"also":[79],"outperforms":[84],"FreeSurfer":[85],"previously":[92],"demonstrated":[93],"use":[95],"cohort":[100],"329":[102],"non-neurodegenerative":[103],"control":[104],"participants":[105],"42":[107],"patients":[108],"with":[109,119],"ALS":[110],"to":[111],"investigate":[112],"reduced":[113],"hypothalamic":[114],"volume":[115],"its":[117],"association":[118],"appetite,":[120],"hypermetabolism":[121],"weight":[123],"loss":[124]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-05-09T13:55:54.758798","created_date":"2025-10-10T00:00:00"}