{"id":"https://openalex.org/W3089507319","doi":"https://doi.org/10.21105/joss.02432","title":"cerebra: A tool for fast and accurate summarizing of variant calling format (VCF) files","display_name":"cerebra: A tool for fast and accurate summarizing of variant calling format (VCF) files","publication_year":2020,"publication_date":"2020-10-01","ids":{"openalex":"https://openalex.org/W3089507319","doi":"https://doi.org/10.21105/joss.02432","mag":"3089507319"},"language":"en","primary_location":{"id":"doi:10.21105/joss.02432","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.02432","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.02432.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://joss.theoj.org/papers/10.21105/joss.02432.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066474655","display_name":"Lincoln Harris","orcid":"https://orcid.org/0000-0003-2544-4225"},"institutions":[{"id":"https://openalex.org/I4210121800","display_name":"Chan Zuckerberg Initiative (United States)","ror":"https://ror.org/02qenvm24","country_code":"US","type":"company","lineage":["https://openalex.org/I4210121800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lincoln Harris","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA, United States"],"raw_orcid":"https://orcid.org/0000-0003-2544-4225","affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA, United States","institution_ids":["https://openalex.org/I4210121800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091469229","display_name":"Rohan Vanheusden","orcid":null},"institutions":[{"id":"https://openalex.org/I4210121800","display_name":"Chan Zuckerberg Initiative (United States)","ror":"https://ror.org/02qenvm24","country_code":"US","type":"company","lineage":["https://openalex.org/I4210121800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rohan Vanheusden","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA, United States","institution_ids":["https://openalex.org/I4210121800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063108270","display_name":"Olga Botvinnik","orcid":"https://orcid.org/0000-0003-4412-7970"},"institutions":[{"id":"https://openalex.org/I4210121800","display_name":"Chan Zuckerberg Initiative (United States)","ror":"https://ror.org/02qenvm24","country_code":"US","type":"company","lineage":["https://openalex.org/I4210121800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Olga Botvinnik","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA, United States"],"raw_orcid":"https://orcid.org/0000-0003-4412-7970","affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA, United States","institution_ids":["https://openalex.org/I4210121800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028345315","display_name":"Spyros Darmanis","orcid":"https://orcid.org/0000-0003-4002-8158"},"institutions":[{"id":"https://openalex.org/I4210121800","display_name":"Chan Zuckerberg Initiative (United States)","ror":"https://ror.org/02qenvm24","country_code":"US","type":"company","lineage":["https://openalex.org/I4210121800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Spyros Darmanis","raw_affiliation_strings":["Chan Zuckerberg Biohub, San Francisco, CA, United States"],"raw_orcid":"https://orcid.org/0000-0003-4002-8158","affiliations":[{"raw_affiliation_string":"Chan Zuckerberg Biohub, San Francisco, CA, United States","institution_ids":["https://openalex.org/I4210121800"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210121800"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11886401,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":"54","first_page":"2432","last_page":"2432"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10201","display_name":"Speech Recognition and Synthesis","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10201","display_name":"Speech Recognition and Synthesis","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9769999980926514,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9692999720573425,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5700080990791321},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.43668562173843384},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3581048846244812}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5700080990791321},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.43668562173843384},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3581048846244812}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.21105/joss.02432","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.02432","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.02432.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.21105/joss.02432","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.02432","pdf_url":"https://joss.theoj.org/papers/10.21105/joss.02432.pdf","source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3089507319.pdf","grobid_xml":"https://content.openalex.org/works/W3089507319.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1596062789","https://openalex.org/W2103441770","https://openalex.org/W2123056040","https://openalex.org/W2169456326","https://openalex.org/W2241763745","https://openalex.org/W2309021002","https://openalex.org/W2525536774","https://openalex.org/W2616950861","https://openalex.org/W2758815122","https://openalex.org/W2770095154","https://openalex.org/W2898789672","https://openalex.org/W2964008919","https://openalex.org/W3078555423","https://openalex.org/W3145128584","https://openalex.org/W4206037526"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2130043461","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
