{"id":"https://openalex.org/W4386815584","doi":"https://doi.org/10.21105/joss.10122","title":"HLAfreq: Download and combine HLA allele frequency data","display_name":"HLAfreq: Download and combine HLA allele frequency data","publication_year":2026,"publication_date":"2026-05-03","ids":{"openalex":"https://openalex.org/W4386815584","doi":"https://doi.org/10.21105/joss.10122"},"language":"en","primary_location":{"id":"doi:10.21105/joss.10122","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.10122","pdf_url":null,"source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.21105/joss.10122","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008288587","display_name":"David A. Wells","orcid":"https://orcid.org/0000-0002-4531-5968"},"institutions":[{"id":"https://openalex.org/I4210123186","display_name":"Vaccitech (United Kingdom)","ror":"https://ror.org/02m8mqx79","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210123186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David A. Wells","raw_affiliation_strings":["Vaccitech plc"],"raw_orcid":"https://orcid.org/0000-0002-4531-5968","affiliations":[{"raw_affiliation_string":"Vaccitech plc","institution_ids":["https://openalex.org/I4210123186"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075076385","display_name":"Michael McAuley","orcid":"https://orcid.org/0000-0003-2486-931X"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Michael McAuley","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Helsinki"],"raw_orcid":"https://orcid.org/0000-0003-2486-931X","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Helsinki","institution_ids":["https://openalex.org/I133731052"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.00030082,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"11","issue":"121","first_page":"10122","last_page":"10122"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11020","display_name":"Immune Cell Function and Interaction","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10371","display_name":"Immune Response and Inflammation","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7719045877456665},{"id":"https://openalex.org/keywords/allele-frequency","display_name":"Allele frequency","score":0.7062127590179443},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.6537469625473022},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.6203240156173706},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5729612708091736},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5289656519889832},{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.5205991268157959},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.4396829605102539},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34485185146331787},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24511080980300903},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23629000782966614},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16654524207115173},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.16430094838142395},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14040148258209229},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.072957843542099}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7719045877456665},{"id":"https://openalex.org/C37463918","wikidata":"https://www.wikidata.org/wiki/Q387981","display_name":"Allele frequency","level":4,"score":0.7062127590179443},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.6537469625473022},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.6203240156173706},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5729612708091736},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5289656519889832},{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.5205991268157959},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.4396829605102539},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34485185146331787},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24511080980300903},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23629000782966614},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16654524207115173},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.16430094838142395},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14040148258209229},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.072957843542099},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.21105/joss.10122","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.10122","pdf_url":null,"source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},{"id":"doi:10.1101/2023.09.15.557761","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2023.09.15.557761","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2023/09/16/2023.09.15.557761.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nd","license_id":"https://openalex.org/licenses/cc-by-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"doi:10.5281/zenodo.19559637","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.19559637","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Software"},{"id":"doi:10.5281/zenodo.19559638","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.19559638","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Software"}],"best_oa_location":{"id":"doi:10.21105/joss.10122","is_oa":true,"landing_page_url":"https://doi.org/10.21105/joss.10122","pdf_url":null,"source":{"id":"https://openalex.org/S4210214273","display_name":"The Journal of Open Source Software","issn_l":"2475-9066","issn":["2475-9066"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315853","host_organization_name":"Open Journals","host_organization_lineage":["https://openalex.org/P4310315853"],"host_organization_lineage_names":["Open Journals"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Open Source Software","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5099999904632568,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1968426398","https://openalex.org/W2011301426","https://openalex.org/W2032856926","https://openalex.org/W2052655883","https://openalex.org/W2134182833","https://openalex.org/W2169978372","https://openalex.org/W2217402295","https://openalex.org/W2295529617","https://openalex.org/W2342249984","https://openalex.org/W2769985603","https://openalex.org/W2917973515","https://openalex.org/W2977747936","https://openalex.org/W2984055282","https://openalex.org/W4299820060"],"related_works":["https://openalex.org/W4382066202","https://openalex.org/W2019587571","https://openalex.org/W2124736181","https://openalex.org/W59372684","https://openalex.org/W2350696645","https://openalex.org/W2348342388","https://openalex.org/W3140051735","https://openalex.org/W2098867544","https://openalex.org/W2085477059","https://openalex.org/W1990385708"],"abstract_inverted_index":{"Abstract":[0],"The":[1],"Allele":[2],"Frequency":[3],"Net":[4],"Database":[5],"contains":[6],"publicly":[7],"available":[8],"data":[9,62],"on":[10],"human":[11],"immune":[12],"gene":[13],"frequencies":[14,66],"for":[15],"different":[16],"populations":[17],"from":[18],"a":[19,25],"variety":[20],"of":[21],"sources.":[22],"We":[23,55],"introduce":[24],"python":[26],"package":[27],"HLAfreq":[28,38,70],"to":[29,46,63],"download,":[30],"combine,":[31],"and":[32,51,67,77],"analyse":[33],"this":[34],"data.":[35],"In":[36],"particular,":[37],"can":[39],"combine":[40],"multiple":[41],"datasets":[42],"and/or":[43],"prior":[44],"knowledge":[45],"improve":[47],"allele":[48,65],"frequency":[49],"estimates":[50],"produce":[52],"credible":[53],"intervals.":[54],"demonstrate":[56],"these":[57],"features":[58],"using":[59],"real":[60],"world":[61],"visualise":[64],"compare":[68],"populations.":[69],"is":[71],"hosted":[72],"at":[73],"www.github.com/Vaccitech/HLAfreq/":[74],"with":[75],"documentation":[76],"detailed":[78],"examples.":[79]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":1}],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2025-10-10T00:00:00"}
